Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phac9g03568 ATGGGTCGTCCAAAATTGATCTTGAAACCCATCACAAATGCGAGAGATCGTGATTTGGCTTTCATGAAGAGGAAGAAGGCACTGATGAAGACAATATCTGAATTTTGTAGTGTGTGTGGAGTGAAAGCTTGCTTGATTATATATGATGGCAAAGGTGATTCTCCACCCTTGACTTGGCCCCAAGACCCCAGTGAGATGCATTCCATCATCCAAAGGTATGAGAGTATGATGTCTGAGAAAATTCCTAAGAACTTTGATCTCAATAACTTTTTTGAGATTAGGAAGAACATGGTTGACAGTGAGATTTCCAAAGTTCAAAAAGATATCCTTGAGACCAAATATCCAACTTGGCATCCATTATTCAACACCCTTGGTGCTGAAGAATTGAAGAATTTCATTGCTAGATTGGATATTAAGCTTGAAGCTTGCAATCAACGAACAAAAATGTTCGAATGCAAGAAACAAACTGAAGCACAATTCAATTTCAAGCAATGCTTGATTCAACCAGGAAGTGTTGCTCCAAACTCAAACCAACTGATTTCCATGCAGGATATCTTCCAAAACCAGCTTCTTTTTGCCCCAATGAAGCCATTAAATGCTGACCTTGCACCATTTCTCCAATACAATCTTGAAAAAGGTTCTAGTTCTCTATCCCAAAATCTTAACTTTGATGCAAATCTTATGCAATTGAAGGCAAGGAACGAAGTGGTGGTGAATAAAACCAATGAAGTTGCTGTGCCACCAGAACAAGCATGCCAAATTGATGTGTTTAAGAATCCTTCAAATCAATTTGATGTGCCTTGTGATCTACTTGATGACTCTTTGAATTTTTTTAACCAACTTGGTGAAATACAAAGTTTGAATCAACATTGGGGGAATAATCAACATGATGCACATGTGATTGGAGGAAGTTCCACAACAATGAATGGTGGTGTTACTACTTATGATACAAATTTTCATGGAAATCAGTACAATCCAGAGTTCTCACTTTGCAATTACAATGGAGTTTTGCAATCCTTTAACAATAATGCATCATTGCAGAATATTGGTTTTCAATAA 1059 0.372 MGRPKLILKPITNARDRDLAFMKRKKALMKTISEFCSVCGVKACLIIYDGKGDSPPLTWPQDPSEMHSIIQRYESMMSEKIPKNFDLNNFFEIRKNMVDSEISKVQKDILETKYPTWHPLFNTLGAEELKNFIARLDIKLEACNQRTKMFECKKQTEAQFNFKQCLIQPGSVAPNSNQLISMQDIFQNQLLFAPMKPLNADLAPFLQYNLEKGSSSLSQNLNFDANLMQLKARNEVVVNKTNEVAVPPEQACQIDVFKNPSNQFDVPCDLLDDSLNFFNQLGEIQSLNQHWGNNQHDAHVIGGSSTTMNGGVTTYDTNFHGNQYNPEFSLCNYNGVLQSFNNNASLQNIGFQ* 353
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phac9g03568 352 Gene3D - 14 97 IPR036879 GO:0003677|GO:0046983
Phac9g03568 352 CDD MADS_SRF_like 2 88 IPR033897 GO:0000981|GO:0000987|GO:0045944
Phac9g03568 352 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Phac9g03568 352 SUPERFAMILY SRF-like 2 84 IPR036879 GO:0003677|GO:0046983
Phac9g03568 352 PANTHER MADS BOX PROTEIN 5 144 - -
Phac9g03568 352 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 52 IPR002100 GO:0003677|GO:0046983
Phac9g03568 352 Coils Coil 126 146 - -
Phac9g03568 352 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phac9g03568 Phac-Chr9 34818715 34819997 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Phac9g03568 1 150 Type I MADS-box Gene Family AT5G55690 30.968 1.62e-17 79.7
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Phac9g03568 SRF-TF 3.3e-10 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Phac9g03568 - - vra:106760100 570.081