LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Phac9g03562	ATGAGGCAGGCTTTTGATCCTTCTTCTTTTGGCCCTTCCAAGATTCCAGCTATAAAAATACCTGGAAAATTGGGGAATGGTGCGTGGGATGCTTTGTCTGGATCTGATTCCTACCATGCTTCATCTGATGCTAGCCTCTTTTCTAGCTCATTACCTGTACTTCCGCATGAAAAATTGAACTTGAATGAAACTGAAAATGGTTATCAATCTGTTGATGACATCTCATCTGAATTTAAGAAGCTCCATCAAGATGCAGAGGGAGATGGTTCACTTGAAGATGGTGATACTCATGCTATTGGACCCGTGCTTCCTGATGATGAGGAGGAGCTTTTAGCTGGTATAATGGATGATTTCGACCTTAGTGGTTTGCCTGGATCCCTCGAGGACTTGGAAGAGTATGATCTGTTTGGTAGTGGTGGAGGTATGGAACTCGAAACTGATCCACAGGAAAGTGTCTCTGGGGGTATTTCTAAGTTAAGCTTTGGTGATGGTAGTGTTAGTAATGGATTGCCTCATTATTCTTTTCCTAATGGTGTGGGAACTGTTGCTGGAGAACATCCATATGGAGAGCATCCTTCTCGAACATTATTTGTTCGTAATATTAACAGTAATGTGGAGGACTCGGAGCTGAGAGCTCTTTTTGAGCTTTATGGGGATATCAGAACCCTGTATACTGCATGCAAACATCGGGGTTTTGTAATGATATCCTATTATGACATCCGTGCCGCTCGAACAGCTATGCGAGCATTACAAAACAAACCTCTGCGGCGCAGGAAACTAGATATTCACTTCTCAATACCAAAGGATAATCCATCAGACAAGGATATAAACCAAGGAACATTGGTAGTTTTCAATCTGGATCCATCCGTGTCAAATGAAGACCTCCGCCAAATATTTGGGGCTTACGGAGAGGTCAAAGAGATAAGGGAAACTCCTCACAAGAGGCATCACAAGTTTATTGAATTTTATGATGTCAGAGCTGCAGAAGCAGCTCTTAAATCATTGAACAGGAGTGACATAGCTGGAAAACGCATAAAGCTTGAACCTAGTCGGCCTGGAGGAGCTAGAAGAAATTTGATGCTCCAATTGAACCAAGAGCTTGACCAAGATGAATCTCGGAGTTTCCGATATCAAGTGGGTTCACCTGTAGCTAATTCTCCTCCAGGTAACTGGTTACAGTTCAATAGCCCTGTTGAGCAGAATTCAATGCAAAATATCAGTCATTCTCCTGGTTCTAGAATCCTGAGTCCAACAACAGGCAATCATTTACCTGGTTTAGCTTCAATTTTGCAACCACAGATATCTAACACTGTGAAGGCAGCTGCTATTGGCAATGACTTGGGAAGGAGCAGTCAAGGAGAGCACATATTTACCGGTTTGAATTCTTCACAAGGAGCTAGTTTTCAATCACATTCACTTCCAGAGCCAAAATTCAGCCAATATCGCGGAGCATTGTCCTCATTTGGTCCATCAACATCAAATGGATCCTCAGTGGAAACTTTGTCAGGGCCACAGTTTCTATGGGGAAGCCCAACCCTCTACTCGGAGCATACCAAACCTTCAGCTTGGCCAAGATCATCTGTGGGGCATCTATTTGCATCCAGTGGAAAGAGCCATGCCTTTCCATTTTCTAGTCAGAATAGCTCTTTTGTTGGTTCATCCCAGCATCATCACAATCATCACGTTGGCTCTGCCCCATCAGGTTTGCCTTTTGAGAGGCACTTTGGTTTCCATCCCGAGTCATCTGAAACTTCATTCATGAATAATGTTGGTTATGGAGGCATGAGTCTAGGGCACACTGATGGAAATTACATGGTTAATGTGGGTGGATCTGTTAATCCTAGCAACACTATCCCAAGAAATATATCTGATAATGGTTCATCAAACTTCAGAATGAGATCTCCGAGGCTTAGCCCTGTGTACTTGGGAAATGGTCCTTATCCAGGACTTTTACCTACCACTTTGGAGGGTTTGGCTGAGCGTGCTCGGAGTAGATGGATAGAGAACAATGTGAGCCAGGCTGATAGCAAGAAGCAATTTCAGCTTGACTTGGATAAAATTAGAAGTGGTGAAGATACAAGGACTACATTAATGATAAAGAATATCCCAAACAAATACACCTCGAAAATGTTATTAGCTGCCATTGATGAAAATCACAGGGGTACTTATGATTTTCTCTATCTGCCAATTGACTTCAAGAATAAATGCAACGTGGGCTATGCATTTATCAATATGCTGTCACCCTCTCTTATTATTCCATTCTACGAGACATTCAACGGGAAGAAATGGGAGAAATTTAATAGTGAAAAAGTTGCTTCTTTGGCATATGCTCGAATTCAAGGAAAGTCTGCCCTTGTGAGCCACTTTCAAAATTCAAGTTTGATGAATGAAGATAAGCGATGTCGCCCTATTCTTTTCCACTCAGAGGGCTCTGAAGCCGGTGATCTGATTGTACAAGAGCATCTTCCCTCCATCCCCAACAATCTAAACATTCAGGCACTAAAGTCAAGTGAGTTACATTCAAGTGATTTTGCAGGGAGCCCTCCGAACGTTGGCCCTTCTGCAAGCTTGGATGCAAAATAA	2583	0.4266	MRQAFDPSSFGPSKIPAIKIPGKLGNGAWDALSGSDSYHASSDASLFSSSLPVLPHEKLNLNETENGYQSVDDISSEFKKLHQDAEGDGSLEDGDTHAIGPVLPDDEEELLAGIMDDFDLSGLPGSLEDLEEYDLFGSGGGMELETDPQESVSGGISKLSFGDGSVSNGLPHYSFPNGVGTVAGEHPYGEHPSRTLFVRNINSNVEDSELRALFELYGDIRTLYTACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIHFSIPKDNPSDKDINQGTLVVFNLDPSVSNEDLRQIFGAYGEVKEIRETPHKRHHKFIEFYDVRAAEAALKSLNRSDIAGKRIKLEPSRPGGARRNLMLQLNQELDQDESRSFRYQVGSPVANSPPGNWLQFNSPVEQNSMQNISHSPGSRILSPTTGNHLPGLASILQPQISNTVKAAAIGNDLGRSSQGEHIFTGLNSSQGASFQSHSLPEPKFSQYRGALSSFGPSTSNGSSVETLSGPQFLWGSPTLYSEHTKPSAWPRSSVGHLFASSGKSHAFPFSSQNSSFVGSSQHHHNHHVGSAPSGLPFERHFGFHPESSETSFMNNVGYGGMSLGHTDGNYMVNVGGSVNPSNTIPRNISDNGSSNFRMRSPRLSPVYLGNGPYPGLLPTTLEGLAERARSRWIENNVSQADSKKQFQLDLDKIRSGEDTRTTLMIKNIPNKYTSKMLLAAIDENHRGTYDFLYLPIDFKNKCNVGYAFINMLSPSLIIPFYETFNGKKWEKFNSEKVASLAYARIQGKSALVSHFQNSSLMNEDKRCRPILFHSEGSEAGDLIVQEHLPSIPNNLNIQALKSSELHSSDFAGSPPNVGPSASLDAK*	861

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Phac9g03562	860	FunFam	MEI2-like protein 5 isoform 2	183	277	-	-
	Phac9g03562	860	ProSiteProfiles	Eukaryotic RNA Recognition Motif (RRM) profile.	194	267	IPR000504	GO:0003723
	Phac9g03562	860	MobiDBLite	consensus disorder prediction	841	860	-	-
	Phac9g03562	860	Gene3D	-	278	377	IPR012677	-
	Phac9g03562	860	CDD	RRM3_MEI2_like	697	782	IPR034454	-
	Phac9g03562	860	Pfam	RNA recognition motif 2	694	790	IPR007201	-
	Phac9g03562	860	CDD	RRM2_MEI2_like	278	348	-	-
	Phac9g03562	860	PANTHER	RNA RECOGNITION MOTIF-CONTAINING	41	823	-	-
	Phac9g03562	860	SMART	rrm1_1	280	348	IPR000504	GO:0003723
	Phac9g03562	860	SMART	rrm1_1	195	263	IPR000504	GO:0003723
	Phac9g03562	860	SMART	rrm1_1	696	772	IPR000504	GO:0003723
	Phac9g03562	860	SUPERFAMILY	RNA-binding domain, RBD	696	780	IPR035979	GO:0003676
	Phac9g03562	860	SUPERFAMILY	RNA-binding domain, RBD	191	354	IPR035979	GO:0003676
	Phac9g03562	860	Pfam	RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)	196	260	IPR000504	GO:0003723
	Phac9g03562	860	Pfam	RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)	281	346	IPR000504	GO:0003723
	Phac9g03562	860	Gene3D	-	183	277	IPR012677	-
	Phac9g03562	860	CDD	RRM1_MEI2_like	193	269	IPR034453	-
	Phac9g03562	860	FunFam	Protein MEI2-like 1	278	373	-	-
	Phac9g03562	860	ProSiteProfiles	Eukaryotic RNA Recognition Motif (RRM) profile.	279	352	IPR000504	GO:0003723

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Phac9g03562	Phac-Chr9	34770448	34777409	Dispersed/Tandem

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Phac9g03562	189	387	Eukaryotic Initiation Factors Gene Family	AT1G71770	25.561	2.84e-06	49.3

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Phac9g03562	-		-	gmx:100800877	1583.93