Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phac9g03561 ATGAGGCAGAAGGGTGATGCAATGAGGCAGGCTTTTGATCCTTCTTCTTTTGGCCCTTCCAAGATTCCAGCTATAAAAATACCTGGAAAATTGGGGAATGGTGCGTGGGATGCTTTGTCTGGATCTGATTCCTACCATGCTTCATCTGATGCTAGCCTCTTTTCTAGCTCATTACCTGTACTTCCGCATGAAAAATTGAACTTGAATGAAACTGAAAATGGTTATCAATCTGTTGATGACATCTCATCTGAATTTAAGAAGCTCCATCAAGATGCAGAGGGAGATGGTTCACTTGAAGATGGTGATACTCATGCTATTGGACCCGTGCTTCCTGATGATGAGGAGGAGCTTTTAGCTGGTATAATGGATGATTTCGACCTTAGTGGTTTGCCTGGATCCCTCGAGGACTTGGAAGAGTATGATCTGTTTGGTAGTGGTGGAGGTATGGAACTCGAAACTGATCCACAGGAAAGTGTCTCTGGGGGTATTTCTAAGTTAAGCTTTGGTGATGGTAGTGTTAGTAATGGATTGCCTCATTATTCTTTTCCTAATGGTGTGGGAACTGTTGCTGGAGAACATCCATATGGAGAGCATCCTTCTCGAACATTATTTGTTCGTAATATTAACAGTAATGTGGAGGACTCGGAGCTGAGAGCTCTTTTTGAGCTTTATGGGGATATCAGAACCCTGTATACTGCATGCAAACATCGGGGTTTTGTAATGATATCCTATTATGACATCCGTGCCGCTCGAACAGCTATGCGAGCATTACAAAACAAACCTCTGCGGCGCAGGAAACTAGATATTCACTTCTCAATACCAAAGGATAATCCATCAGACAAGGATATAAACCAAGGAACATTGGTAGTTTTCAATCTGGATCCATCCGTGTCAAATGAAGACCTCCGCCAAATATTTGGGGCTTACGGAGAGGTCAAAGAGATAAGGGAAACTCCTCACAAGAGGCATCACAAGTTTATTGAATTTTATGATGTCAGAGCTGCAGAAGCAGCTCTTAAATCATTGAACAGGAGTGACATAGCTGGAAAACGCATAAAGCTTGAACCTAGTCGGCCTGGAGGAGCTAGAAGAAATTTGATGCTCCAATTGAACCAAGAGCTTGACCAAGATGAATCTCGGAGTTTCCGATATCAAGTGGGTTCACCTGTAGCTAATTCTCCTCCAGGTAACTGGTTACAGTTCAATAGCCCTGTTGAGCAGAATTCAATGCAAAATATCAGTCATTCTCCTGGTTCTAGAATCCTGAGTCCAACAACAGGCAATCATTTACCTGGTTTAGCTTCAATTTTGCAACCACAGATATCTAACACTGTGAAGGCAGCTGCTATTGGCAATGACTTGGGAAGGAGCAGTCAAGGAGAGCACATATTTACCGGTTTGAATTCTTCACAAGGAGCTAGTTTTCAATCACATTCACTTCCAGAGCCAAAATTCAGCCAATATCGCGGAGCATTGTCCTCATTTGGTCCATCAACATCAAATGGATCCTCAGTGGAAACTTTGTCAGGGCCACAGTTTCTATGGGGAAGCCCAACCCTCTACTCGGAGCATACCAAACCTTCAGCTTGGCCAAGATCATCTGTGGGGCATCTATTTGCATCCAGTGGAAAGAGCCATGCCTTTCCATTTTCTAGTCAGAATAGCTCTTTTGTTGGTTCATCCCAGCATCATCACAATCATCACGTTGGCTCTGCCCCATCAGGTTTGCCTTTTGAGAGGCACTTTGGTTTCCATCCCGAGTCATCTGAAACTTCATTCATGAATAATGTTGGTTATGGAGGCATGAGTCTAGGGCACACTGATGGAAATTACATGGTTAATGTGGGTGGATCTGTTAATCCTAGCAACACTATCCCAAGAAATATATCTGATAATGGTTCATCAAACTTCAGAATGAGATCTCCGAGGCTTAGCCCTGTGTACTTGGGAAATGGTCCTTATCCAGGACTTTTACCTACCACTTTGGAGGGTTTGGCTGAGCGTGCTCGGAGTAGATGGATAGAGAACAATGTGAGCCAGGCTGATAGCAAGAAGCAATTTCAGCTTGACTTGGATAAAATTAGAAGTGGTGAAGATACAAGGACTACATTAATGATAAAGAATATCCCAAACAAATACACCTCGAAAATGTTATTAGCTGCCATTGATGAAAATCACAGGGGTACTTATGATTTTCTCTATCTGCCAATTGACTTCAAGAATAAATGCAACGTGGGCTATGCATTTATCAATATGCTGTCACCCTCTCTTATTATTCCATTCTACGAGACATTCAACGGGAAGAAATGGGAGAAATTTAATAGTGAAAAAGTTGCTTCTTTGGCATATGCTCGAATTCAAGGAAAGTCTGCCCTTGTGAGCCACTTTCAAAATTCAAGTTTGATGAATGAAGATAAGCGATGTCGCCCTATTCTTTTCCACTCAGAGGGCTCTGAAGCCGGTGATCTGATTGTACAAGAGCATCTTCCCTCCATCCCCAACAATCTAAACATTCAGGCACTAAAGTCAAGTGAGTTACATTCAAGTGATTTTGCAGGGAGCCCTCCGAACGTTGGCCCTTCTGCAAGCTTGGATGCAAAATAA 2604 0.4274 MRQKGDAMRQAFDPSSFGPSKIPAIKIPGKLGNGAWDALSGSDSYHASSDASLFSSSLPVLPHEKLNLNETENGYQSVDDISSEFKKLHQDAEGDGSLEDGDTHAIGPVLPDDEEELLAGIMDDFDLSGLPGSLEDLEEYDLFGSGGGMELETDPQESVSGGISKLSFGDGSVSNGLPHYSFPNGVGTVAGEHPYGEHPSRTLFVRNINSNVEDSELRALFELYGDIRTLYTACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIHFSIPKDNPSDKDINQGTLVVFNLDPSVSNEDLRQIFGAYGEVKEIRETPHKRHHKFIEFYDVRAAEAALKSLNRSDIAGKRIKLEPSRPGGARRNLMLQLNQELDQDESRSFRYQVGSPVANSPPGNWLQFNSPVEQNSMQNISHSPGSRILSPTTGNHLPGLASILQPQISNTVKAAAIGNDLGRSSQGEHIFTGLNSSQGASFQSHSLPEPKFSQYRGALSSFGPSTSNGSSVETLSGPQFLWGSPTLYSEHTKPSAWPRSSVGHLFASSGKSHAFPFSSQNSSFVGSSQHHHNHHVGSAPSGLPFERHFGFHPESSETSFMNNVGYGGMSLGHTDGNYMVNVGGSVNPSNTIPRNISDNGSSNFRMRSPRLSPVYLGNGPYPGLLPTTLEGLAERARSRWIENNVSQADSKKQFQLDLDKIRSGEDTRTTLMIKNIPNKYTSKMLLAAIDENHRGTYDFLYLPIDFKNKCNVGYAFINMLSPSLIIPFYETFNGKKWEKFNSEKVASLAYARIQGKSALVSHFQNSSLMNEDKRCRPILFHSEGSEAGDLIVQEHLPSIPNNLNIQALKSSELHSSDFAGSPPNVGPSASLDAK* 868
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phac9g03561 867 FunFam MEI2-like protein 5 isoform 2 190 284 - -
Phac9g03561 867 Pfam RNA recognition motif 2 701 797 IPR007201 -
Phac9g03561 867 FunFam Protein MEI2-like 1 285 380 - -
Phac9g03561 867 CDD RRM2_MEI2_like 285 355 - -
Phac9g03561 867 SMART rrm1_1 202 270 IPR000504 GO:0003723
Phac9g03561 867 SMART rrm1_1 287 355 IPR000504 GO:0003723
Phac9g03561 867 SMART rrm1_1 703 779 IPR000504 GO:0003723
Phac9g03561 867 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 201 274 IPR000504 GO:0003723
Phac9g03561 867 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 203 267 IPR000504 GO:0003723
Phac9g03561 867 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 288 353 IPR000504 GO:0003723
Phac9g03561 867 SUPERFAMILY RNA-binding domain, RBD 703 787 IPR035979 GO:0003676
Phac9g03561 867 SUPERFAMILY RNA-binding domain, RBD 198 361 IPR035979 GO:0003676
Phac9g03561 867 MobiDBLite consensus disorder prediction 1 24 - -
Phac9g03561 867 MobiDBLite consensus disorder prediction 848 867 - -
Phac9g03561 867 CDD RRM1_MEI2_like 200 276 IPR034453 -
Phac9g03561 867 CDD RRM3_MEI2_like 704 789 IPR034454 -
Phac9g03561 867 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 286 359 IPR000504 GO:0003723
Phac9g03561 867 MobiDBLite consensus disorder prediction 87 106 - -
Phac9g03561 867 Gene3D - 190 284 IPR012677 -
Phac9g03561 867 Gene3D - 285 384 IPR012677 -
Phac9g03561 867 PANTHER RNA RECOGNITION MOTIF-CONTAINING 46 830 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phac9g03561 Phac-Chr9 34770448 34777095 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Phac9g03561 196 394 Eukaryotic Initiation Factors Gene Family AT1G71770 25.561 2.70e-06 49.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Phac9g03561 - - gmx:100800877 1583.93