Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phac9g03560 ATGAGGCAGGCTTTTGATCCTTCTTCTTTTGGCCCTTCCAAGATTCCAGCTATAAAAATACCTGGAAAATTGGGGAATGGTGCGTGGGATGCTTTGTCTGGATCTGATTCCTACCATGCTTCATCTGATGCTAGCCTCTTTTCTAGCTCATTACCTGTACTTCCGCATGAAAAATTGAACTTGAATGAAACTGAAAATGGTTATCAATCTGTTGATGACATCTCATCTGAATTTAAGAAGCTCCATCAAGATGCAGAGGGAGATGGTTCACTTGAAGATGGTGATACTCATGCTATTGGACCCGTGCTTCCTGATGATGAGGAGGAGCTTTTAGCTGGTATAATGGATGATTTCGACCTTAGTGGTTTGCCTGGATCCCTCGAGGACTTGGAAGAGTATGATCTGTTTGGTAGTGGTGGAGGTATGGAACTCGAAACTGATCCACAGGAAAGTGTCTCTGGGGGTATTTCTAAGTTAAGCTTTGGTGATGGTAGTGTTAGTAATGGATTGCCTCATTATTCTTTTCCTAATGGTGTGGGAACTGTTGCTGGAGAACATCCATATGGAGAGCATCCTTCTCGAACATTATTTGTTCGTAATATTAACAGTAATGTGGAGGACTCGGAGCTGAGAGCTCTTTTTGAGCTTTATGGGGATATCAGAACCCTGTATACTGCATGCAAACATCGGGGTTTTGTAATGATATCCTATTATGACATCCGTGCCGCTCGAACAGCTATGCGAGCATTACAAAACAAACCTCTGCGGCGCAGGAAACTAGATATTCACTTCTCAATACCAAAGGATAATCCATCAGACAAGGATATAAACCAAGGAACATTGGTAGTTTTCAATCTGGATCCATCCGTGTCAAATGAAGACCTCCGCCAAATATTTGGGGCTTACGGAGAGGTCAAAGAGATAAGGGAAACTCCTCACAAGAGGCATCACAAGTTTATTGAATTTTATGATGTCAGAGCTGCAGAAGCAGCTCTTAAATCATTGAACAGGAGTGACATAGCTGGAAAACGCATAAAGCTTGAACCTAGTCGGCCTGGAGGAGCTAGAAGAAATTTGATGCTCCAATTGAACCAAGAGCTTGACCAAGATGAATCTCGGAGTTTCCGATATCAAGTGGGTTCACCTGTAGCTAATTCTCCTCCAGGTAACTGGTTACAGTTCAATAGCCCTGTTGAGCAGAATTCAATGCAAAATATCAGTCATTCTCCTGGTTCTAGAATCCTGAGTCCAACAACAGGCAATCATTTACCTGGTTTAGCTTCAATTTTGCAACCACAGATATCTAACACTGTGAAGGCAGCTGCTATTGGCAATGACTTGGGAAGGAGCAGTCAAGGAGAGCACATATTTACCGGTTTGAATTCTTCACAAGGAGCTAGTTTTCAATCACATTCACTTCCAGAGCCAAAATTCAGCCAATATCGCGGAGCATTGTCCTCATTTGGTCCATCAACATCAAATGGATCCTCAGTGGAAACTTTGTCAGGGCCACAGTTTCTATGGGGAAGCCCAACCCTCTACTCGGAGCATACCAAACCTTCAGCTTGGCCAAGATCATCTGTGGGGCATCTATTTGCATCCAGTGGAAAGAGCCATGCCTTTCCATTTTCTAGTCAGAATAGCTCTTTTGTTGGTTCATCCCAGCATCATCACAATCATCACGTTGGCTCTGCCCCATCAGGTTTGCCTTTTGAGAGGCACTTTGGTTTCCATCCCGAGTCATCTGAAACTTCATTCATGAATAATGTTGGTTATGGAGGCATGAGTCTAGGGCACACTGATGGAAATTACATGGTTAATGTGGGTGGATCTGTTAATCCTAGCAACACTATCCCAAGAAATATATCTGATAATGGTTCATCAAACTTCAGAATGAGATCTCCGAGGCTTAGCCCTGTGTACTTGGGAAATGGTCCTTATCCAGGACTTTTACCTACCACTTTGGAGGGTTTGGCTGAGCGTGCTCGGAGTAGATGGATAGAGAACAATGTGAGCCAGGCTGATAGCAAGAAGCAATTTCAGCTTGACTTGGATAAAATTAGAAGTGGTGAAGATACAAGGACTACATTAATGATAAAGAATATCCCAAACAAATACACCTCGAAAATGTTATTAGCTGCCATTGATGAAAATCACAGGGGTACTTATGATTTTCTCTATCTGCCAATTGACTTCAAGAATAAATGCAACGTGGGCTATGCATTTATCAATATGCTGTCACCCTCTCTTATTATTCCATTCTACGAGGTTCTTATGGGAATATCTTTTTGCTCAATTTTTTTTAATGTTTCTATTATTTTACTTAGTGAAAATTTTCTACAAATATGA 2349 0.4189 MRQAFDPSSFGPSKIPAIKIPGKLGNGAWDALSGSDSYHASSDASLFSSSLPVLPHEKLNLNETENGYQSVDDISSEFKKLHQDAEGDGSLEDGDTHAIGPVLPDDEEELLAGIMDDFDLSGLPGSLEDLEEYDLFGSGGGMELETDPQESVSGGISKLSFGDGSVSNGLPHYSFPNGVGTVAGEHPYGEHPSRTLFVRNINSNVEDSELRALFELYGDIRTLYTACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIHFSIPKDNPSDKDINQGTLVVFNLDPSVSNEDLRQIFGAYGEVKEIRETPHKRHHKFIEFYDVRAAEAALKSLNRSDIAGKRIKLEPSRPGGARRNLMLQLNQELDQDESRSFRYQVGSPVANSPPGNWLQFNSPVEQNSMQNISHSPGSRILSPTTGNHLPGLASILQPQISNTVKAAAIGNDLGRSSQGEHIFTGLNSSQGASFQSHSLPEPKFSQYRGALSSFGPSTSNGSSVETLSGPQFLWGSPTLYSEHTKPSAWPRSSVGHLFASSGKSHAFPFSSQNSSFVGSSQHHHNHHVGSAPSGLPFERHFGFHPESSETSFMNNVGYGGMSLGHTDGNYMVNVGGSVNPSNTIPRNISDNGSSNFRMRSPRLSPVYLGNGPYPGLLPTTLEGLAERARSRWIENNVSQADSKKQFQLDLDKIRSGEDTRTTLMIKNIPNKYTSKMLLAAIDENHRGTYDFLYLPIDFKNKCNVGYAFINMLSPSLIIPFYEVLMGISFCSIFFNVSIILLSENFLQI* 783
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phac9g03560 782 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 194 267 IPR000504 GO:0003723
Phac9g03560 782 SUPERFAMILY RNA-binding domain, RBD 191 354 IPR035979 GO:0003676
Phac9g03560 782 SMART rrm1_1 280 348 IPR000504 GO:0003723
Phac9g03560 782 SMART rrm1_1 195 263 IPR000504 GO:0003723
Phac9g03560 782 Pfam RNA recognition motif 2 694 762 IPR007201 -
Phac9g03560 782 SUPERFAMILY RNA-binding domain, RBD 696 763 IPR035979 GO:0003676
Phac9g03560 782 PANTHER RNA RECOGNITION MOTIF-CONTAINING 41 756 - -
Phac9g03560 782 FunFam Protein MEI2-like 1 278 373 - -
Phac9g03560 782 CDD RRM2_MEI2_like 278 348 - -
Phac9g03560 782 FunFam MEI2-like protein 5 isoform 2 183 277 - -
Phac9g03560 782 Gene3D - 182 277 IPR012677 -
Phac9g03560 782 Gene3D - 278 377 IPR012677 -
Phac9g03560 782 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 196 260 IPR000504 GO:0003723
Phac9g03560 782 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 281 346 IPR000504 GO:0003723
Phac9g03560 782 CDD RRM1_MEI2_like 193 269 IPR034453 -
Phac9g03560 782 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 279 352 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phac9g03560 Phac-Chr9 34770448 34777409 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Phac9g03560 189 387 Eukaryotic Initiation Factors Gene Family AT1G71770 25.561 2.29e-06 49.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Phac9g03560 - - gmx:100800877 1411.36