Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Phac9g03538 ATGTGGAAGATAAAGAATCAGGTAGGAGAAACGAGTGAAGATAGAGGAGATCATAAGAAAGCAGAAGATGAAGGTCCCAGATCATATGACAGCGATTCCTTGGTGCTTATATCAATGGCTCACGTGTTGAAGGATGAAGGGAACAAGCTGTTCCAGAAGCGGAATGCTGAGGGGGCTTTGGCAAAATATGAGAAGGCCCTGAAATTGCTTCCAAGAAATCATGTAGATATTTCTTATTTAAGGAGTAACATGGCTGCGTGCTATATGCAGATGGGTCTCCGTGAGTATCCTAGAGCAATCAATGAATGCAATTTGGCTCTTGAAGTAACACCAAAATATAGTAAAGCTCTGATGAAGAGAGCAAGGTGCTATGAAGCTTTAAATAGGCTGGATTTTGCGCTGAGAGATGTTAGTACTGTTTTGAAGATAGAGCCAAATAATGTAATGGCATTGGAGGTCTCAGATAAGGTGAAGCATGCTCTTGAAGATCGGGGATTAGTCGTAAATGATACAGAAATTGAGTTGCCTCCAGACTATGCCGGACCTCCTATTTTACCTCTGAAAAAAATAGTGAAAGAAAAGAGTCACAAGAAGAAGAAAAACAAAGAGAAGGTGAAGTCTCTTGATAAAATTGAAGAAAAGCAAGCTGAGGAGAAATTAGAAGAGAATAAAGCTGAAGAGAAGGCCGAGGACAGTCGGAAAGAGAAGAAGGCTAACAAATCTAAAAAGAAGAAGGCCAAGGGAAAAAATGTTGAGAAAAAGGATGATGTTAAGGAAGTTATTGAGGAAAAAAGTACTGGTAGAAGTGAAGATATACCTAAGAAAGCAGCAAAACTTGTTTTTGGTGAGGATATAAGATGGGCTGAATTGCCAGTTAATTGCAGCCTCTTTCAGCTAAGGGAAGTTATTTGTGATCGTTTCCCTAGACTTGGAGCAGTTCTTGTCAAATATAAGGACCAAGAGGGTGATCTGGTCACTATCACTTCTGACGAAGAATTAAGGTGGGCTGAAACGGGATCACAGGGTTCTATCCGGCTGTACATAGTGGAAGTTAATCCCGAACATGATCCATTATTTGAGAAGCTTAATGCAAAGAATGCAGAAAAGGTTAGTATTGCTAATTCTCCTGTGAATGGATCTGTGGTGAAAGGAAAGGACATTATTAGCTTATCTTGCATTGAGGATTGGATAATTCGGTTTGCACAACTGTTCAAGAACCATGTTGGGTTGGAACCTGACAGATATTTGTGTTTTCATAAATTTGGAATGAAGCTCTATTCAGAGGCTGTGGAGGAGACAGTTATAAGTGAGGAAGCTCAAGGCGTATTTGATATTGCTGGAGGTAAGTTCCAAGAGATGGCAGCTCTAGCATTGTTCAACTGGGGAAATGTGCATATGTCCAGGGCAAGGTACAGAGTTTATTTTACAGGAGATTCTTCCAAGGAGCATTTGCATGAACAAATCAGAAGTTTGTATGAATGGGCATACGAAGAATATGAAAAATCTGGGGAGAAGTATGAAACAGCCATTGAAATTAAACCAGATTTTTATGAAGGCTTCTTGGCACTAGGCCAACAGCTGTTTGAGCAAGCCAAACTTTCTTGGAATTATGCACTCTGTTCTAAGGTAGATTTATCGACATGGCCCTCCTCCGAGGTTCTTCAGCTTTACAACAGTGCTGAGGATAGTGTAGAGAAAGGAATGCTTATATGGGAAGAATCAGGAGAGCAGCAATTGCAGGAAGCTTCCAATCCGAAGGATATTTTATTACATTTGCAGGACATGGGGTTGGACCAACTATTCAAAAATATTTCAGCAGATGAAATTGCTACACAGGTGGAAAATACGAGGTCTCAAATGAATCTTCTGTGGGGTACCATACTATATGAGCGCTCAATAGTGGAATTCAAGTTAGGATTACTGGGATGGAATGAAAGTCTTGAAGTTGCAGCTGAGAAGTTTCAACTTGCTGGAGCTTCTGCAACAGATATAGCTGTAATGTTGAAGAACCACTGTTCAAATTACGGTCTTGGATTCAAAATTGATGAAATAGTCCGACCATGGAATGAGATGTACAACGCTAAAAAGTTGCAGAAAGGTGTTCCATCATTCCGTTTGGAGCCCTTGTTTAGAAGAAGAATATCTAAAATATACCATGCCTTTGAGCTTGTATGA 2175 0.4014 MWKIKNQVGETSEDRGDHKKAEDEGPRSYDSDSLVLISMAHVLKDEGNKLFQKRNAEGALAKYEKALKLLPRNHVDISYLRSNMAACYMQMGLREYPRAINECNLALEVTPKYSKALMKRARCYEALNRLDFALRDVSTVLKIEPNNVMALEVSDKVKHALEDRGLVVNDTEIELPPDYAGPPILPLKKIVKEKSHKKKKNKEKVKSLDKIEEKQAEEKLEENKAEEKAEDSRKEKKANKSKKKKAKGKNVEKKDDVKEVIEEKSTGRSEDIPKKAAKLVFGEDIRWAELPVNCSLFQLREVICDRFPRLGAVLVKYKDQEGDLVTITSDEELRWAETGSQGSIRLYIVEVNPEHDPLFEKLNAKNAEKVSIANSPVNGSVVKGKDIISLSCIEDWIIRFAQLFKNHVGLEPDRYLCFHKFGMKLYSEAVEETVISEEAQGVFDIAGGKFQEMAALALFNWGNVHMSRARYRVYFTGDSSKEHLHEQIRSLYEWAYEEYEKSGEKYETAIEIKPDFYEGFLALGQQLFEQAKLSWNYALCSKVDLSTWPSSEVLQLYNSAEDSVEKGMLIWEESGEQQLQEASNPKDILLHLQDMGLDQLFKNISADEIATQVENTRSQMNLLWGTILYERSIVEFKLGLLGWNESLEVAAEKFQLAGASATDIAVMLKNHCSNYGLGFKIDEIVRPWNEMYNAKKLQKGVPSFRLEPLFRRRISKIYHAFELV* 725
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Phac9g03538 724 ProSiteProfiles PB1 domain profile. 274 351 IPR000270 GO:0005515
Phac9g03538 724 SMART PB1_new 274 351 IPR000270 GO:0005515
Phac9g03538 724 ProSiteProfiles TPR repeat profile. 40 73 IPR019734 GO:0005515
Phac9g03538 724 SUPERFAMILY CAD & PB1 domains 277 361 - -
Phac9g03538 724 Coils Coil 197 263 - -
Phac9g03538 724 CDD PB1 282 348 - -
Phac9g03538 724 MobiDBLite consensus disorder prediction 1 29 - -
Phac9g03538 724 Pfam PB1 domain 278 349 IPR000270 GO:0005515
Phac9g03538 724 PANTHER PROTEIN CLMP1 11 722 IPR044517 -
Phac9g03538 724 SUPERFAMILY TPR-like 40 532 IPR011990 GO:0005515
Phac9g03538 724 MobiDBLite consensus disorder prediction 216 237 - -
Phac9g03538 724 Gene3D - 272 350 - -
Phac9g03538 724 ProSiteProfiles TPR repeat profile. 114 147 IPR019734 GO:0005515
Phac9g03538 724 MobiDBLite consensus disorder prediction 216 255 - -
Phac9g03538 724 Gene3D Tetratricopeptide repeat domain 38 165 IPR011990 GO:0005515
Phac9g03538 724 SMART tpr_5 40 73 IPR019734 GO:0005515
Phac9g03538 724 SMART tpr_5 114 147 IPR019734 GO:0005515
Phac9g03538 724 SMART tpr_5 78 113 IPR019734 GO:0005515
Phac9g03538 724 MobiDBLite consensus disorder prediction 8 29 - -
       

Duplication type information


Select Gene Chromosome Start End Duplicated_type
Phac9g03538 Phac-Chr9 34568606 34577009 Wgd
       

Functional genes information


Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Phac9g03538 28 147 Calmodulin-binding Proteins AT3G25230 32.836 9.75e-09 56.6
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Phac9g03538 K26538 - gmx:100820306 1100.89