Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phac9g03506 ATGGCTGGAACACTTCCAGGAGTTGAATGTGCAAGAAGGAGAAGATTCCATAGATGCTTGGATTCAAACTCAACTTCTTTAGCTTCACATGTATCCACAAGGCGCTCTTCTTTTGGTCTGTATGCAAGTAACCATGGATATTGTTTTTCCTTGTCCACTTCACAGCAAAGAGACATGTTATACAAGAGACACCCTGATGAGGATATGGTAGGAGCAGCCAGAGAAGCCAGACAGAGATTGGATGACAAGTTTAGAGCACAAAGGATGTCAGATAACAAAAGGCAAAACAGTACAACATGTGCGGAGGGAGGAAGAACAAGGATAACAGAGTTGCACACAGAGGTATATGGGTCAAAGAAGAGTGGTGCAAGGAAATTCAGTTGGACTAGATGGAGCTGGAAGGCCTCTGAACAAGAGGACTGTGCCGTGTGCTTGGAATTATTCAGGGTTGGAGAGACACTGATCCATCTTCCTTGTGCACATAAGTTCCATGACAGATGCTTGAAACCATGGTTGGAAAACAATTCTCATTGTCCATGTTGCAGAACAACCATTCTTTCCCTCTAG 567 0.4392 MAGTLPGVECARRRRFHRCLDSNSTSLASHVSTRRSSFGLYASNHGYCFSLSTSQQRDMLYKRHPDEDMVGAAREARQRLDDKFRAQRMSDNKRQNSTTCAEGGRTRITELHTEVYGSKKSGARKFSWTRWSWKASEQEDCAVCLELFRVGETLIHLPCAHKFHDRCLKPWLENNSHCPCCRTTILSL* 189
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phac9g03506 188 PANTHER SI:CH211-59O9.10 74 186 - -
Phac9g03506 188 SUPERFAMILY RING/U-box 128 186 - -
Phac9g03506 188 FunFam Zinc finger family protein 115 187 - -
Phac9g03506 188 CDD RING-H2_PA-TM-RING 140 182 - -
Phac9g03506 188 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 108 187 IPR013083 -
Phac9g03506 188 ProSiteProfiles Zinc finger RING-type profile. 141 182 IPR001841 -
Phac9g03506 188 SMART ring_2 141 181 IPR001841 -
Phac9g03506 188 Pfam Ring finger domain 140 182 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phac9g03506 Phac-Chr9 34286562 34288815 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Phac9g03506 1 85 C3H Transcription Factor Family AT2G15580 48.421 4.06e-18 74.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Phac9g03506 - - gmx:100527583 329.331