Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phac9g03452 ATGCAGCCCTGTAGCAGAGAAATGCAAGGAATCAACGCACTCTTCAACTCTTCCCAAATCTCCCTCCAGGACCTCCACACCACAACCAACCAGATCCAAAATTCACACATGAACAACCACCACCACCACCACCAACAACCACTCCAACACCAACTCCCTCACTTCGACCCAACCTCTCAGGATGACTTTCTCGACCAAATGTTCTCCTCCTGGCCCGACCTCAACCCAAACAAGCCCTTGTGGGACCCCAATAACCTCTCCGACCAAACCACTCCCTCCAACAACGACAACAATAATAATACCAGTAACAATGTCGCTTTCCCCTACGATGAACCCTCCACTTTGGCCTCCAAGTTCCGCGACCACCAGATCAGCGCCTCCACAACCAAAAACGCCGCCGCAGCTCTCATGCTCCAACACCAACTCCTCATGTCCAGAGACTCTCCGCTCCTTCACATGCCGCTTTCCTTACCTCAAAACGACGTCGTTGACGCCTCCTCCTTCAAATCCCCCAATCCCGGTGGTGACACTTCAGTGCAAGCTCTCTACAACGGCTTCGCCGGATCTCTGCATGGCGCAGGTCAAGCCTCCAACCAGACTCAGCATTTTCAACATCCTCAGGGAAGTTCGAATCCGATACAGGGACAGAATTTTGGTGCGCCGGGTGCTGGGGCTGCGACGAACCAAGCTCCGGCGAGTGGCGCGCCGGCTCAGCCGAGGCAGAGGGTTCGTGCAAGGAGAGGTCAGGCCACGGACCCACACAGCATCGCTGAAAGGTTAAGAAGGGAGAGAATCGCAGAGAGAATGAAAGCCCTACAGGAACTGGTTCCCAATGCCAACAAGACAGATAAGGCGTCCATGCTAGATGAGATCATCGATTACGTGAAGTTCCTGCAGCTCCAAGTCAAGGTTCTGAGCATGAGCAGATTGGGCGGTGCAGCTGCTGTCGCACCCCTTGTTGCTGATATGTCTTCTGAGGTTATTATTGTACAAGTGCTTTTCCATTTTCATTCACTCTCTGATAATAACCTACCACAAATTTCACAGCAGAAAACTTGTTTTATCCTAGAATTATTAGGTAGCCGTACTATGATAATGAAGCAAAGTTTGAGAGGGTAA 1119 0.5147 MQPCSREMQGINALFNSSQISLQDLHTTTNQIQNSHMNNHHHHHQQPLQHQLPHFDPTSQDDFLDQMFSSWPDLNPNKPLWDPNNLSDQTTPSNNDNNNNTSNNVAFPYDEPSTLASKFRDHQISASTTKNAAAALMLQHQLLMSRDSPLLHMPLSLPQNDVVDASSFKSPNPGGDTSVQALYNGFAGSLHGAGQASNQTQHFQHPQGSSNPIQGQNFGAPGAGAATNQAPASGAPAQPRQRVRARRGQATDPHSIAERLRRERIAERMKALQELVPNANKTDKASMLDEIIDYVKFLQLQVKVLSMSRLGGAAAVAPLVADMSSEVIIVQVLFHFHSLSDNNLPQISQQKTCFILELLGSRTMIMKQSLRG* 373
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phac9g03452 372 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 249 298 IPR011598 GO:0046983
Phac9g03452 372 SMART finulus 255 304 IPR011598 GO:0046983
Phac9g03452 372 FunFam Transcription factor bHLH66 246 311 - -
Phac9g03452 372 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 247 309 IPR036638 GO:0046983
Phac9g03452 372 Pfam Helix-loop-helix DNA-binding domain 254 299 IPR011598 GO:0046983
Phac9g03452 372 MobiDBLite consensus disorder prediction 191 223 - -
Phac9g03452 372 MobiDBLite consensus disorder prediction 51 73 - -
Phac9g03452 372 PANTHER TRANSCRIPTION FACTOR BHLH83-RELATED 71 313 - -
Phac9g03452 372 MobiDBLite consensus disorder prediction 190 256 - -
Phac9g03452 372 Gene3D - 244 306 IPR036638 GO:0046983
Phac9g03452 372 MobiDBLite consensus disorder prediction 80 110 - -
Phac9g03452 372 MobiDBLite consensus disorder prediction 35 111 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phac9g03452 Phac-Chr9 33907184 33911194 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Phac9g03452 223 322 Basic Helix-Loop-Helix Transcription Factor Gene Family AT2G24260 78.000 9.46e-49 163
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Phac9g03452 HLH 1.3e-09 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Phac9g03452 - - gmx:100807286 409.838