Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phac9g03420 ATGGAAGCTAGTACTGGACTTTTTGCAGGTACTCCAAACAGCAAAGAGCTTGTGGCCATTCAAGGACCCGATGAGCCTAAGCCGGTGAAGAACTTAGATGGTCAGCTCTGTGAGATATGTGGTGATTCTGTGGGACTTACTGTGGAAGGAGACTTATTTGTAGCTTGTGAAGAGTGTGGTTTCCCAGTGTGCAGGCCATGCTATGAGTATGAGAGAAGGGAAGGGACTCAAGTTTGTCCTCAGTGTCATACAAGATACAAGCGCATCAAAGGAAGTCCAAGAGTGGAGGGAGATGAGGATGAAGACGATGTGGATGATATTGAACATGAATTCAAGAATGAACAGGTGCATAAAGGACACATGATCCATGGAGATGATAATGAGAATTCTAAATCAGGTTTAGCAAAGGTGAATGGGGAGCTGCTTTCTACTAGTGTGGGAGAACCTGGTGCAAAGTTGGATGACAAGGAGAAAATAGATGAGTGGATGTTGCGCCAAGGGAATCTATGGCCTGAAACTGATTCCTCAGTTGATCATGAAAAGGCCATGAAAGAGCCATTGTCAAGGAAAGTAGCAATACCATCAGGCAAACTCAGTCCTTACAGAATGATGGTTGTGGCAAGATTCGTCCTTCTATTACTCTTCTTTCAGTACAGAATCTTCCACCCTGTACCTGATGCAGTTGGACTATGGTTCATATCTGTAACGTGTGAAATCTGGCTTGCATTATCCTGGATGATTGATCAGATTCCCAAATGGTTTCCCATTGATCGCGAGACATATCTTGATCGTCTTTCAATCAGGTTTGAACAAGAGAACAAGCCAAATATGCTTTCTCCCATAGATATCATTGTCACTACTGTGGATCCAATCAAGGAACCTCCTCTTGTGACAGCCAACACTGTTCTTTCAATCTTGGCCCTGGATTACCCTGCTGACAAAATCTCATGCTATGTTTCTGATGACGGAGCTTCCATGCTCACCTTTGAAGCTCTTCAAGAAACTGCTGAGTTTTCCAGAAAGTGGGTACCTTTCTGCAAGAAGTTCTCTATAGAACCTAGAGCACCAGAAAAGTACTTCTCTGAGAAAATAGATTTTCTAAAGGATAAGCTTCAATCCACTTACGTAAAAGAACGCCGTACTATGAAGAGAGAATACGAAGAATTTAAGGTGAGAATAAATGCACTAGTGGCTAAATCTATGCGAGTTCCCCCAGAAGGGTGGACTATGAAAGATGAGACACCATGGCCAGGAAACAACTCCAAAGATCATCCAAGTATGATACAGGTCCTTCTTCCTCGCAATGCAGGTAATGAACTTCCTTGTCTTGTCTACACATCTCGTGAGAAAAGGCCTGCATTTCAGCACCACGGAAAAGCTGGCGCAATCAACGCCCTGCTTCGAGTATCAGCAGTGCTAAGCAATGCTCCTTTTGTGCTCAACTTGGATTGCAATCACTATGTAAATAACAGCAAAGTTGTGCGAGAAGCCATGTGTTTCTTTATGGACATACAACTTGGGAATGGCATTGGCTTTGTACAGTTTCCACTCAGATTTGACAGCCTAGATAGGAATGATCGTTATGCCAACAAAAACACTGTTTTGTTTGATATTAACTTACGGTGCCTAGATGGAATTCAGGGACCTGTTTATGTTGGTTCAGCATGTATCTTCAGAAGGAAATGCTTAACTGGCTGTGACTCACCAATGTCTTCAAAACGCTCAAGTATGGTGCAAGTACACTCAAAACAGGATGAGAATGGAGAAGAAGCTAGCATAACAGCAGCAACAGATGAGGAAAAGGAGCTATTGAAGTCACAGACGGATGATGAAAATAAATTTAGAAAGTCCACACTTTTCATGAACTCTTCATTAACAGAACAAGGTGGTGCTGATCCTTCTTCCAGTCAGGAAGTCCTGCTTAAAGAAGCTATTCATGTCATGAGTTCTAAATATGAAGACAGAACTCTCTGGGGACATGAGGAGGGTTTAAGCTATGGATCTATAGCAGCAGATACTCTGACAAGTTTGAAGATGCATTGTCATGGTTGGAGGTCTGTATATTGCATGCCAAAAAGAGATCCATTCAGGGGTACAGCTCCTATCAACCTCACAGATAGACTCAACCAGGTGCTGAGATGGGCAGTGGGATCACTTCAGATCCTATTCAGCCGCCATTGCCCTCTTCTATATGGCTTCAATGGTGGAAAACTCAAGGGACTCCAAAGGATTGCCTATATTAACAGCACTGTCGACCCCTTCAGCTCAATACCCCTCCTAATATATTGCATCATTCCTGCTATATGCTTGCTTACTGATAAATTCATCACACCATCGGTTGGTACTTTTGCTAGTCTAATTTTCATCTCATTGTTCATCTCAATCTTTGCCTCGGCAATTCTTGAATTGAGATGGAGTGGAGTCAGCCTTGAGGAGTGGTGGAGAAGCCAGCAATTCTGGGTGATTGGCAGTGTGTCTGCAAACCTCTTTGCCGTTGTGCAAGGCATTATGGGAGCCCTGCCACTGGGTAGAGTCAACACAAACTTCAGCATTGTATCAAAGGCACCAGATGATGGAGAGTTTCGTGAACTCTATACCATTAGATGGACTGCACTTCTAATACCTCCAACCACCATCATAATAATCAACCTCATTGGTATTGTGGCTGGCTTCACAGATTCCATAAACAGTGGTGGAAATTCTTGGGGAGCACTGCTTGGGAAACTCTTCTTTTCTTTATGGGTTATTGTCCATTTGTACCCTTTCCTTAAAGGTCTAATGGGTAGGCAGAACAGAACACCAACTCTTATTGTCATATGGTCTGTGCTCTTGGCTTCTATCTTCTCCTTGGTTTGGGTGAGAGTTGACCCTTTTGTGTTGAAAACCAAAGGACCTGATGCCAAGCAATGTGGAATCAGTTGCTGA 2925 0.4325 MEASTGLFAGTPNSKELVAIQGPDEPKPVKNLDGQLCEICGDSVGLTVEGDLFVACEECGFPVCRPCYEYERREGTQVCPQCHTRYKRIKGSPRVEGDEDEDDVDDIEHEFKNEQVHKGHMIHGDDNENSKSGLAKVNGELLSTSVGEPGAKLDDKEKIDEWMLRQGNLWPETDSSVDHEKAMKEPLSRKVAIPSGKLSPYRMMVVARFVLLLLFFQYRIFHPVPDAVGLWFISVTCEIWLALSWMIDQIPKWFPIDRETYLDRLSIRFEQENKPNMLSPIDIIVTTVDPIKEPPLVTANTVLSILALDYPADKISCYVSDDGASMLTFEALQETAEFSRKWVPFCKKFSIEPRAPEKYFSEKIDFLKDKLQSTYVKERRTMKREYEEFKVRINALVAKSMRVPPEGWTMKDETPWPGNNSKDHPSMIQVLLPRNAGNELPCLVYTSREKRPAFQHHGKAGAINALLRVSAVLSNAPFVLNLDCNHYVNNSKVVREAMCFFMDIQLGNGIGFVQFPLRFDSLDRNDRYANKNTVLFDINLRCLDGIQGPVYVGSACIFRRKCLTGCDSPMSSKRSSMVQVHSKQDENGEEASITAATDEEKELLKSQTDDENKFRKSTLFMNSSLTEQGGADPSSSQEVLLKEAIHVMSSKYEDRTLWGHEEGLSYGSIAADTLTSLKMHCHGWRSVYCMPKRDPFRGTAPINLTDRLNQVLRWAVGSLQILFSRHCPLLYGFNGGKLKGLQRIAYINSTVDPFSSIPLLIYCIIPAICLLTDKFITPSVGTFASLIFISLFISIFASAILELRWSGVSLEEWWRSQQFWVIGSVSANLFAVVQGIMGALPLGRVNTNFSIVSKAPDDGEFRELYTIRWTALLIPPTTIIIINLIGIVAGFTDSINSGGNSWGALLGKLFFSLWVIVHLYPFLKGLMGRQNRTPTLIVIWSVLLASIFSLVWVRVDPFVLKTKGPDAKQCGISC* 975
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phac9g03420 974 Pfam Zinc-binding RING-finger 27 104 IPR027934 -
Phac9g03420 974 Coils Coil 379 399 - -
Phac9g03420 974 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 20 110 IPR013083 -
Phac9g03420 974 CDD mRING-HC-C4C4_CesA 35 85 - -
Phac9g03420 974 MobiDBLite consensus disorder prediction 579 610 - -
Phac9g03420 974 MobiDBLite consensus disorder prediction 569 610 - -
Phac9g03420 974 SUPERFAMILY Nucleotide-diphospho-sugar transferases 281 777 IPR029044 -
Phac9g03420 974 Pfam Cellulose synthase 281 579 IPR005150 GO:0016020|GO:0016760|GO:0030244
Phac9g03420 974 Pfam Cellulose synthase 580 968 IPR005150 GO:0016020|GO:0016760|GO:0030244
Phac9g03420 974 PANTHER X-BOX TRANSCRIPTION FACTOR-RELATED 185 941 - -
Phac9g03420 974 SUPERFAMILY RING/U-box 22 107 - -
Phac9g03420 974 Gene3D Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A 269 377 IPR029044 -
Phac9g03420 974 Gene3D Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A 419 568 IPR029044 -
Phac9g03420 974 FunFam Cellulose synthase 19 110 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phac9g03420 Phac-Chr9 33608499 33614293 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Phac9g03420 1 974 Cell Wall Biosynthesis AT5G17420 62.852 0.0 1320
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Phac9g03420 K10999 - gmx:100777270 1760.35