LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Phac9g03378	ATGATAAATGCTAAGCTTGTGGACACACTAATAGATCCGAATGTCAAATGTGTACTTGGCCAAGGAGAACCAAATTTTGATTTTGGGAGATACCAAAGGATAATTGATGATATCACACTTTCTGACAAGGACCAAGGTTCAAACTATGCAACTGAAGCCCATACTCACCAACATAATCGGGATGATGAAGTGTTTAGTGTGAATCAGAATATAGGGCAGCTGCAGACATTATCAGAGAATGACCCTGCCAGGGACATCTCATCCTGCTGTCCATCATACTTTGGGTCCATGGGAGTCAGCAAGCAGAATGAAGGACCAGAGATTTTATCTGATCTGGAGCACAGGAAATCTGTAAGACCAGTTACCAAGGTTTGTAGTCCTGAGAATAACTCCACTGAAGTGGCTGAGTTATCCTTGAGCACAGCTTTGGAGAAAGCTGCTGCTTGTGTTAATGATTTGGTATGTAATGTTACTTCGGATCACAATGAAACCACTACTACTAATAGGGATTATGGGCCACTCCTAGCGAGTGGCAGCCCAATAAGACTTCTTCAAGATTATGCTTCTGATGACACTTCAGCTAATGACACATTCTCAGGAGGTGCTTATACTGGTGTTTCAGTTGTCCATAAAGATTCTGGGAGTCATATGGAAGTTGGTATTGGATCTAAGAGTTCCACCAGTACTCAAAAGGGTTTTGGGTCAGTCTCCATAACATCACGGGATGATTCAGAAATATCTCCACATTTATTACCAGAGTCTAAGAAAACTCGGAACCGAAAAAAATTTGTCTCACGTTGGAGTAATGATGGATGTATTGAGCACAACCTTGAAAACCAGATGTCTGTTAATTTTGCTTCTTCGATAGAAGCTTTCAAGGGCAAAGATAGATTACAGGATACTGCCATTGACACTGATAGTAAAAGTGGTAATGCTGAAAAGGAAGATGAGGGGAAAACCTCAAAATTTGAACCAAATGTTATGAAAGTAGATGAATTCGGAAGACAACTAAGAGAAGGTCTTTCAGATAGTGATTCTGATGATTCATGCCTTCACCGGACAAGGAGGCTAAATAAAAGAGATAGAAGCTGGAGTCGCAGCCGGTCTCCTCCAGACAGGAGGAGTAGGAGGAATAGGAGGAGTCCTCGGAGGAGAAGAGATAAAAGAAACAGGTCTCGCAGCTGGTCACCCCGGCATCGAAGAAGCAGTAGGTCTCCAATCTCAAGACGTCCTGGTGACTTTCGTGGTGAGAATATTAAAAGGGACAAGGATCAGTGCTTGGACTTTCTTCGAGGTAAGTGCTATCGAGGAGCATCTTGCAGGTACATTCACCATGAATCTGATATGAATGCTACTTCAAGGCACTATAAGAATAAACATGATTTGGAAGTCAGTTATTATGAAAAAGAATCCAAGACTAATGGAGACATGACGAATATTTCTTCTAAAGTGTTTGATAATGAGCTTGATGGAGTTAGAAGTCGGGATGTGGATCTTAGTTTGAATGTGACTAGCCAGGAAGTAGTGCAGAAAAAAGAAGATTCAGGGAAGAATGTTGTTGCATCAATCATTCATCTTGATGGTCAATCAGTTAATAGCAATCCAGGTAAATCTAAATCTATCAGAGAGGTTTCTCCTGAAATGCAGGAAACCATTGTAGTCAGGGAGGATAGTAAGAATTCAATCCATGAGAATGATGGTTCGGAAGCAGGTGATTCTCAACAGCAACACATGGTTGAAGGCTTTCACCCTGATGCTTTAGGCTGTGATAATACTTCTAAATCATCTGGTACATATAAAGATATTCCCTCAGGAGATGGTCTATTTGTTCAGAAAATGCCACTCAGTGTTTCTTCTGTTGGAATTCAGGAACATTCTGGTTACCCATCTCAGCATGTAAATGCATCCTCTGTGACTGATACATCACATGATAATAGATCAACTGTTTCTACTATTGTTAATGAAGTTCCTGGCAATGTCATATCAGAGCAGGCTTCATTGCACCCTCAGGCTTCAAAAGAGTTACCTCCACAATTTGGCTCTTCAGTGGAATTTCCACATCATAATTACCAGTTGACTGCATCTGTTGTTTCACATTCCCCAGGTGAAAATCCTGTGCATATGCCACAAATTTCAAGGCAGTATGATGTGATGCAACAAAGTGCATTCTTTCCTTTCCAATCCACTACCAGAGAAAAGTTTGAACCTTACCCACCTCCTTTACACATGCAGAATGCTCACTTCAATGTACCACCTAATAGCTCTTGGACATCCTTGCCACTGCCACCGCCACCACTGCCACCGCCACCACCACCAAGAGTGGTGTATGATCCCAGTGTAAACTCAGGAGTTGTAAAATCATATATTTCTTCTGAATTCATTCAGAATCAATTGCAGTCAAGAACTGAAATTGTTTCCCAGACTTCCATGAAACCTTTACCAACTAGTTCTCAGAATTCTGAATTTCAGGATCTAGGATACCCTCCAATGCAGGATCATTCACGAACTTTCATGCTTGCTGAACCTTTCTCTCCAAAGCAACTTCCTCATGGGAACCCAGCTAGTCAATTGCTTTCAGGATCTAGTCTCAATAGAGATGAATTTCATAATCAACTTCCAAGGCAGGATTCAAAATTTTCCAGTACCACATCGTTTGGCAGCCTGCAGCCTCAACAAAATCAATTTTCCTGGAAATCGGATGTGAACAGACAACAACCTTCTCTGGGTGGCAAGTTACACCCCGAAGGACATTTTATGACATCCTCGCACATTGATTCATTATCACAGAAGCAACAATCAATGTATAATTTTCAGTGTTCTGTACCTGAGGCTAATTTGGGTGTGCCTGGGGAGACTGCTACTGTTTCCAGATATCCACCTGATTTTCTGGATAGCAATCATTCAACTTCTCTTCCACCGTTTGGTGGATCAAGAATATCTGCTCACTATAATCCTTATGCATCAACCTTTGAGAAACCACTAAGTTCCAAATTCAGTTCAAGTATTTTTAGACAGGAAAATGAAATAATCCATGGTAACAATTATGCTTCTTCTAGATTGAACCATACTACTGTAAATGGGGAGAGTGATGGTGGGGTTGGATCAAGACATTCGGCATCTGCATCAAAATCAGGTAGATCTCTTGGTCAGATTTTACCTAGATCTGGTGGTGACCAATATGATCCACTTTTTGACAGCATTGAACCATCATCCTCTCTGAGAAAAATTGATTTTGATCAGAAGCAGGAAGTTACAGGTGAATCCAACGTCAGCCTAAGGCCCAAAAGTTCTTACATGTCTTTGGATGTGGATGAGAAAAACAAGCAGGAGGAGGTTGGGGCTGTTGCCTCTACCACTTCTCAAAATAATGATGAATATGGTGAGACAGCAGATGCAGAAGTTGGTGATATTGAAAATGAGAGCCTAAGTGATGATGTGGATGTTGCAAAAATGTCTACAGAGGAGGTTGAGATTAATCGGGTCAAGTCTCCGGGGAAAAGAAAAAAGAGTAAGGATTCCAGATCGATGAAATTGTTCAAAGTTTCCATTGCGAATTTTGTAAAGGAAGTTTTAAAACCATCATGGCGGCAAGGTAATATGAGTAAGGTTGCTTTCAAAACCATTGTGAAGAAGACCGTGGATAAAGTGTCAGGAGCCATGAAAGGCCACCGTATACCTAAGTCCCAAGCGAAGATAAGTCAATATATTGATTCATCACAGCGAAAGTTGACTAAACTTGTGATGGGTTATGTTGACAAGTATGTGAAGGTATGA	3774	0.4107	MINAKLVDTLIDPNVKCVLGQGEPNFDFGRYQRIIDDITLSDKDQGSNYATEAHTHQHNRDDEVFSVNQNIGQLQTLSENDPARDISSCCPSYFGSMGVSKQNEGPEILSDLEHRKSVRPVTKVCSPENNSTEVAELSLSTALEKAAACVNDLVCNVTSDHNETTTTNRDYGPLLASGSPIRLLQDYASDDTSANDTFSGGAYTGVSVVHKDSGSHMEVGIGSKSSTSTQKGFGSVSITSRDDSEISPHLLPESKKTRNRKKFVSRWSNDGCIEHNLENQMSVNFASSIEAFKGKDRLQDTAIDTDSKSGNAEKEDEGKTSKFEPNVMKVDEFGRQLREGLSDSDSDDSCLHRTRRLNKRDRSWSRSRSPPDRRSRRNRRSPRRRRDKRNRSRSWSPRHRRSSRSPISRRPGDFRGENIKRDKDQCLDFLRGKCYRGASCRYIHHESDMNATSRHYKNKHDLEVSYYEKESKTNGDMTNISSKVFDNELDGVRSRDVDLSLNVTSQEVVQKKEDSGKNVVASIIHLDGQSVNSNPGKSKSIREVSPEMQETIVVREDSKNSIHENDGSEAGDSQQQHMVEGFHPDALGCDNTSKSSGTYKDIPSGDGLFVQKMPLSVSSVGIQEHSGYPSQHVNASSVTDTSHDNRSTVSTIVNEVPGNVISEQASLHPQASKELPPQFGSSVEFPHHNYQLTASVVSHSPGENPVHMPQISRQYDVMQQSAFFPFQSTTREKFEPYPPPLHMQNAHFNVPPNSSWTSLPLPPPPLPPPPPPRVVYDPSVNSGVVKSYISSEFIQNQLQSRTEIVSQTSMKPLPTSSQNSEFQDLGYPPMQDHSRTFMLAEPFSPKQLPHGNPASQLLSGSSLNRDEFHNQLPRQDSKFSSTTSFGSLQPQQNQFSWKSDVNRQQPSLGGKLHPEGHFMTSSHIDSLSQKQQSMYNFQCSVPEANLGVPGETATVSRYPPDFLDSNHSTSLPPFGGSRISAHYNPYASTFEKPLSSKFSSSIFRQENEIIHGNNYASSRLNHTTVNGESDGGVGSRHSASASKSGRSLGQILPRSGGDQYDPLFDSIEPSSSLRKIDFDQKQEVTGESNVSLRPKSSYMSLDVDEKNKQEEVGAVASTTSQNNDEYGETADAEVGDIENESLSDDVDVAKMSTEEVEINRVKSPGKRKKSKDSRSMKLFKVSIANFVKEVLKPSWRQGNMSKVAFKTIVKKTVDKVSGAMKGHRIPKSQAKISQYIDSSQRKLTKLVMGYVDKYVKV*	1258

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Phac9g03378	1257	MobiDBLite	consensus disorder prediction	300	418	-	-
	Phac9g03378	1257	MobiDBLite	consensus disorder prediction	217	262	-	-
	Phac9g03378	1257	MobiDBLite	consensus disorder prediction	246	262	-	-
	Phac9g03378	1257	ProSiteProfiles	Zinc finger C3H1-type profile.	420	447	IPR000571	GO:0046872
	Phac9g03378	1257	MobiDBLite	consensus disorder prediction	626	646	-	-
	Phac9g03378	1257	MobiDBLite	consensus disorder prediction	1106	1129	-	-
	Phac9g03378	1257	MobiDBLite	consensus disorder prediction	555	574	-	-
	Phac9g03378	1257	MobiDBLite	consensus disorder prediction	874	913	-	-
	Phac9g03378	1257	MobiDBLite	consensus disorder prediction	219	244	-	-
	Phac9g03378	1257	PANTHER	PROTEIN FRIGIDA-ESSENTIAL 1	125	1256	-	-
	Phac9g03378	1257	MobiDBLite	consensus disorder prediction	372	405	-	-
	Phac9g03378	1257	Gene3D	-	420	475	-	-
	Phac9g03378	1257	MobiDBLite	consensus disorder prediction	300	355	-	-
	Phac9g03378	1257	MobiDBLite	consensus disorder prediction	1020	1066	-	-
	Phac9g03378	1257	MobiDBLite	consensus disorder prediction	874	906	-	-
	Phac9g03378	1257	MobiDBLite	consensus disorder prediction	1020	1049	-	-
	Phac9g03378	1257	MobiDBLite	consensus disorder prediction	1078	1097	-	-
	Phac9g03378	1257	MobiDBLite	consensus disorder prediction	1112	1127	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Phac9g03378	Phac-Chr9	33238351	33250769	Tandem

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	C3H	Phac9g03378		None	None	None

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Phac9g03378	-		-	vum:124822814	1910.96