Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phac9g03350 ATGGCCGAAGCAGAAGACAACGATACCAGCTCGCCCGAGCGCGAGGACCAAACCAAAATTGACAAGAAGAAGCTTCGCAAGAGAAAAAGACCAAACAAGAGGGAACAAAAACAAGAGGAGAAGAACGATGTGAAGATTGATAACACGCTAACACAGGCCGAAGATGAAGAAGAAGAAAAAGAAGAGACACAGGTGAACAGTAACGATTCATCCGGAATCATGAGTTCCGATTCTTTCTCCTCACTAACCTTGTCCGAACCTACTTCCAAAGCCATTGCGGACATGGGCTTCCACCTTATGACTCAGATTCAAGCGAGGGCGATTCCGCCGCTGCTGATGGGAAAGGACGTGCTGGGTGCGGCGAGAACGGGTGCCGGGAAAACCCTAGCGTTTTTGGTTCCGGCGCTGGAGTTGCTGTACAACTCTCAGTTCACGCCGCTCAACGGAACGGGTGTTGTTGTGATATGCCCGACGAGGGAGCTCGCGATTCAGACGCACGCCGTGGCGAAGGAACTGCTGAAGTACCATTCGCTAACGCTCGGGTTGGTGATTGGGGGTTCCGGGCGAAAGGGAGAGGCTGAGCGCATTGTGAAAGGGGTGAACCTATTGGTGGCGACGCCGGGTAGGCTTCTCGATCATCTTCAAAACACGAAAGGGTTCATATATAAAAACTTGGAGTGCCTCGTGATTGATGAAGCCGACAGGATATTGGAAGCAAACTTTGAGGAGGATATGAAGCAGATTATTAACATACTTCCAAAGAAAAGACAAACAGCTTTGTTTTCAGCCACACAAACAAAGAAGGTTGAGGATCTTGCCCGCTTATCTTTTCAGACAACTCCTATCTATATCAATGTAGATGATGGGAGAAAAAAGGTGACAAATGAAGGATTACAACAGGGTTATGTTGTTGTTCCCTGTGCTAAGCGTTTTGTTGTTCTCTACTCATTCTTGAGGAGATATCAATCAAAAAAAGTGATGGTTTTTTTCTCTTCATGCAACTCTGTCAAATTCCACGCAGATCTTCTCAAGTGCACTGGGTTGGACTGCTTAAGTATTCATGGAAAACAAAAACAACATGCCCGTACTACTACGTTCTTCAACTACTGCAAAGCTGAAAAGGGGATCTTGCTCTGTACTGATGTTGCTGCTCGTGGACTTGACATACCTGATGTGGACTGGATTGTGCAGTATGATCCACCTGATGAACCAAAGGAATATATCCATAGGGTTGGTAGAACAGCTCGTGGAGAAGGTGGAAAAGGAAATGCTTTACTTTTTCTGATTCCTGAAGAATTGAAATTTCTTCACTATTTGAAGGCGGCGAAGGTTCCTGTGAAAGAGTATGCATTTGACCATAAGAAGCTGGCAAATGTACAATCTCAACTGGAGAAGTTGGTGGCTGGCATCTATCATTTGAACAATATGGCTAAAGACGCATATCGGTCTTATATATTAGCATATAATGCACATTCTATGAAAGATATATTCAATGTTCACCGCCTAGATTTACTGGCTGTTGCTACTTCATTTTGTTTTTCCAATCCGCCGAAGGTGCATCTAAACATAGATAGCAGTGCTTCGAAGCATAGGAAGAAAGTACGCAAAGTGGAGGGAAAGAGATGA 1626 0.4502 MAEAEDNDTSSPEREDQTKIDKKKLRKRKRPNKREQKQEEKNDVKIDNTLTQAEDEEEEKEETQVNSNDSSGIMSSDSFSSLTLSEPTSKAIADMGFHLMTQIQARAIPPLLMGKDVLGAARTGAGKTLAFLVPALELLYNSQFTPLNGTGVVVICPTRELAIQTHAVAKELLKYHSLTLGLVIGGSGRKGEAERIVKGVNLLVATPGRLLDHLQNTKGFIYKNLECLVIDEADRILEANFEEDMKQIINILPKKRQTALFSATQTKKVEDLARLSFQTTPIYINVDDGRKKVTNEGLQQGYVVVPCAKRFVVLYSFLRRYQSKKVMVFFSSCNSVKFHADLLKCTGLDCLSIHGKQKQHARTTTFFNYCKAEKGILLCTDVAARGLDIPDVDWIVQYDPPDEPKEYIHRVGRTARGEGGKGNALLFLIPEELKFLHYLKAAKVPVKEYAFDHKKLANVQSQLEKLVAGIYHLNNMAKDAYRSYILAYNAHSMKDIFNVHRLDLLAVATSFCFSNPPKVHLNIDSSASKHRKKVRKVEGKR* 542
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phac9g03350 541 ProSitePatterns DEAD-box subfamily ATP-dependent helicases signature. 229 237 IPR000629 -
Phac9g03350 541 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 19 260 IPR027417 -
Phac9g03350 541 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 77 105 IPR014014 GO:0003724
Phac9g03350 541 CDD DEADc_DDX18 88 285 IPR044773 GO:0003724|GO:0005524
Phac9g03350 541 MobiDBLite consensus disorder prediction 1 81 - -
Phac9g03350 541 SMART helicmild6 337 418 IPR001650 -
Phac9g03350 541 Gene3D - 18 287 IPR027417 -
Phac9g03350 541 MobiDBLite consensus disorder prediction 7 22 - -
Phac9g03350 541 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 313 467 IPR001650 -
Phac9g03350 541 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 108 283 IPR014001 -
Phac9g03350 541 MobiDBLite consensus disorder prediction 33 51 - -
Phac9g03350 541 SMART DUF4217_3 458 521 IPR025313 -
Phac9g03350 541 Pfam DEAD/DEAH box helicase 101 272 IPR011545 GO:0003676|GO:0005524
Phac9g03350 541 Pfam Domain of unknown function (DUF4217) 459 519 IPR025313 -
Phac9g03350 541 CDD SF2_C_DEAD 298 428 - -
Phac9g03350 541 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 149 439 IPR027417 -
Phac9g03350 541 PANTHER RNA HELICASE 34 459 - -
Phac9g03350 541 Gene3D - 294 536 IPR027417 -
Phac9g03350 541 MobiDBLite consensus disorder prediction 66 81 - -
Phac9g03350 541 Pfam Helicase conserved C-terminal domain 313 417 IPR001650 -
Phac9g03350 541 SMART ultradead3 96 301 IPR014001 -
Phac9g03350 541 FunFam RNA helicase 294 524 - -
Phac9g03350 541 Coils Coil 46 66 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phac9g03350 Phac-Chr9 33007334 33013816 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Phac9g03350 58 436 Eukaryotic Initiation Factors Gene Family AT1G72730 30.548 5.37e-46 164
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Phac9g03350 K13179 - gmx:100793807 920.613