Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phac9g03183 ATGGAACTCACCGAAGAACAACAACGACAAGTGGAAGCGAACCGCGCAGCGGCGATCGCAAAACGCAAAGCGTTCTTAGAATCCAAAGCACAACAACAAGAGCAACCTCATCGCGAAGGAGAAATCACCACCAATCCCAACCCTTGGCACCTTTTCAAGTGCCAAAAGTTTCCTAAACCTCAACCCATAAAGTTCCTTGCCAGACTCGAAATATGCTCCCCCGATTCCTTCTCCATCACGCCCGTTCCTCTCCCTTCATTCCCCTTCCCCGGTCACCAGCACTGTCTCTCCACTTTAAACTCCATTCTCTCAAATGTGATGCTTTCGCACTTCACACAGACCACCGGAGGGGTCAAGGCCTGTGTGTTCAAGCTCACGGAGTACCATGCCGTGCTCAGACAGTTGAAGGCCGAGGCGGAGGCTCTGCAGGTGGAGGAGATCCCCTGGGCGACGTTCAACGTGGTGGAGCGTCTCTCGCATTCGGTCGCTGCTGGGCGGTGGACTCCGGTGCGGCCGGAGCACTTGGCCGACGAGGAGGTAGAGCGCCTGATCGCGAAACTCCCAAGGACTCTCCTTGACGTGTTGCTCCCTTTCCAGCACGACGGACTGCGGTTCGCGTTGAGAAGAGGCGCGCGGTGCCTCATTGCTGATGATATGGGCCTCGGGAAAACGCTCCAGGCTATTGCTATTGCCGGGTGTTTTCTGGATGAAGGGTCTATACTCGTGGTTTGTCCTGCTGTATTGCGGTTTTCGTGGGCGGAGGAATTGGAGCGATGGCTTCCTTTCTGCTTGCCGGCTGATATACATCTCGTTTTTGGCCATCAAGACAACCCTATATATTTAACAAGAAGCCCTAGAGTTGTGGTTATTTCTTATACCATGCTTCATCGTCTAAGAAAGAACATGCTTGAACTTGAATGGGCTCTTCTGATTGTTGATGAATCTCATCATGTGCGATGTACGAAGAAAACAGAACCAGGAGAGATACAGGCTGTTCTTGATGTGGCTTCAAAAGTCAATCGTATAATTCTGCTATCAGGGACTCCTTCTCTGTCAAGACCGTACGACATATATAACCAGATAAATATGTTATGGCCTGGTTTGCTGGGGAAGACTAAATACGAGTTTGCAAAAACTTACTGCGATTTAAAATATATCAAAGGCAATCAAGGCAAATATTTTGCGGATTATTCAAAGGGTGTGCGCTTGGAAGAGTTAAACGTGTTACTAAAGCAAACTGTTATGATAAGGCGTCTGAAGGAACATGTGATGCTACAGTTACCTCCGAAACGTCGGCAAATTATAAGACTGTTGATAAAGCGATCGGATATAGTTGCTGCTAAAACCGCAATTGGGGTATTAAATATTGAGGCCACTGAAAGGGAAAGTGAAGACATACCTTTAGAAAATTTGGATGAACCTGATGGAAAGCTTTCTTATCAGGAACTTGGAATTGCAAAGCTTTCTGGTTTTCGTGAATGGCTTGCCCTCCATCCAATTGTTTCTGGATCAGAGAATGCTTCAAAAATGATAATTTTTGCTCATCACCACAAAGTTCTTGATGGAGTACAGGAGTTTATATGCGAGAAAGGTATAAATTTTGTACGAATTGATGGAAATACTCTTGCCAGAGATAGGCAATCAGCAGTAGTCTCATTTCGGTCATCACCAGAGGTTAAAATTGCGATAATAGGTATTCTAGCAGCAGGTTTTGGACTTGATTTCTCAACAGCGCAAGAAGTAGTGTTCTTGGAGCTACCACAATGCCCAACTCTAATGCTCCAGGCTGAGGATAGAGCTCATCGTCGAGGACAAACAAATGCAGTTAATGTTTACATATTCTGTGCAAAGGATACCTTGGATGAATCACATTGGAAAAATATGAACAAAAGTTTGCAACGTGTTTCACGTACAACTGATGGCAAATATGATGCGATGAAAGAGATAGAGGTTGAAGGTATTTCTTCTTTAGACTCATCTTTTAAAAGTGATAATTGTAAAGAACAATCTGCATGCAAAGTTGCAGTAGAAGAAACACAATTGGATGAGCAACCTCCTGCAGTAAATTCAAATGATTCAGAAGCAAGTCAAGATGATAAATCCGGCGAGGGATCTCCTTTTGTTAACAAGTCAACTGAGAGTTTTAATGTTTTGGCTGATGATGTCTCCTGCCAAGATTTAGGCAAAGCTTCAGTTCTGAATGGAAAGAGTTTTGAAGACACAAATCCATTGCAGGATATGAAATCTGTTTCAACAACAGAAGCAGATGACAACCAGTCTGTTCAGCTGGTTGAAGCTGATAGTCATTGTTCTAATCAAGTTGATTTTCTGCGATTTGAGGTAAATTTAGAACTTGTTGGTTGA 2364 0.4442 MELTEEQQRQVEANRAAAIAKRKAFLESKAQQQEQPHREGEITTNPNPWHLFKCQKFPKPQPIKFLARLEICSPDSFSITPVPLPSFPFPGHQHCLSTLNSILSNVMLSHFTQTTGGVKACVFKLTEYHAVLRQLKAEAEALQVEEIPWATFNVVERLSHSVAAGRWTPVRPEHLADEEVERLIAKLPRTLLDVLLPFQHDGLRFALRRGARCLIADDMGLGKTLQAIAIAGCFLDEGSILVVCPAVLRFSWAEELERWLPFCLPADIHLVFGHQDNPIYLTRSPRVVVISYTMLHRLRKNMLELEWALLIVDESHHVRCTKKTEPGEIQAVLDVASKVNRIILLSGTPSLSRPYDIYNQINMLWPGLLGKTKYEFAKTYCDLKYIKGNQGKYFADYSKGVRLEELNVLLKQTVMIRRLKEHVMLQLPPKRRQIIRLLIKRSDIVAAKTAIGVLNIEATERESEDIPLENLDEPDGKLSYQELGIAKLSGFREWLALHPIVSGSENASKMIIFAHHHKVLDGVQEFICEKGINFVRIDGNTLARDRQSAVVSFRSSPEVKIAIIGILAAGFGLDFSTAQEVVFLELPQCPTLMLQAEDRAHRRGQTNAVNVYIFCAKDTLDESHWKNMNKSLQRVSRTTDGKYDAMKEIEVEGISSLDSSFKSDNCKEQSACKVAVEETQLDEQPPAVNSNDSEASQDDKSGEGSPFVNKSTESFNVLADDVSCQDLGKASVLNGKSFEDTNPLQDMKSVSTTEADDNQSVQLVEADSHCSNQVDFLRFEVNLELVG* 788
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phac9g03183 787 Coils Coil 125 145 - -
Phac9g03183 787 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 177 418 IPR027417 -
Phac9g03183 787 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 306 657 IPR027417 -
Phac9g03183 787 SMART helicmild6 521 604 IPR001650 -
Phac9g03183 787 FunFam SNF2 DNA repair protein, putative 169 417 - -
Phac9g03183 787 PANTHER DNA ANNEALING HELICASE AND ENDONUCLEASE ZRANB3 FAMILY MEMBER 5 750 - -
Phac9g03183 787 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 496 650 IPR001650 -
Phac9g03183 787 MobiDBLite consensus disorder prediction 678 709 - -
Phac9g03183 787 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 204 367 IPR014001 -
Phac9g03183 787 SMART ultradead3 191 386 IPR014001 -
Phac9g03183 787 MobiDBLite consensus disorder prediction 683 709 - -
Phac9g03183 787 Gene3D - 171 412 IPR038718 -
Phac9g03183 787 Gene3D - 413 690 IPR027417 -
Phac9g03183 787 Pfam Helicase conserved C-terminal domain 502 604 IPR001650 -
Phac9g03183 787 MobiDBLite consensus disorder prediction 24 45 - -
Phac9g03183 787 CDD SF2_C_SNF 486 615 - -
Phac9g03183 787 Pfam SNF2-related domain 212 440 IPR000330 GO:0005524|GO:0140658
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phac9g03183 Phac-Chr9 31343988 31357891 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Phac9g03183 509 622 RAD5 or RAD16-like Gene Family AT1G11100 38.596 2.08e-15 79.0
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Phac9g03183 SNF2_N 4.3e-25 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Phac9g03183 K25861 - gmx:100788690 1286.17