Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phac9g03180 ATGGAAGAAGATCAAGAAGTGAAGCACTTGTGCAAGTTCTGCAGCAAGAGCTTCCCTTGCGGGAGATCCTTGGGTGGTCACATGAGGTCACATGTCGCCAATGTTTCAACCGAGACAGAGAAACTTTCGTTTTTCAGCAACAACAATGGTGGAGGAGATAGAGACACGGGAATAATGGGTTCTGAAGGGGGAACTAGCAATGGAGGCTATGGTCTGAGAGAGAACCCGAAGAAGACTTCGAGGTTCACGGATTCCATTGAGGACACTATGTTGGTCTTGGACAAGTTGTGCAAGGAGTGTGGCAAAGGCTTTCACTCTTGGAAAGCTCTGTTTGGTCACATGAAGTGCCATTCCGAGAGAGTATCCCAAAACAACAGCAGCTTATTGGAGGATCAAGATTCGTGGACCGAAAACACGAATGGTAGCCAGAAGATGGTCTTGGATGATAGCCACTCTGACGATGAAGCCACTGCTCCAAATCGAAGGAGAAGATCCAAGAGGGGAAGGACAAGGTACGTGGCCCCATCAACTTCTTCTGTGTCCTTTGTTTCTGAGTCAGAGCAGGAGCAGGAAGAGGTCGCCATGAGTTTGATGATGCTCAGCAGGGATCTTAGTCCTTGGTGTGGTCTCAGTTCTGTTAACTCATTGCACTTTGAATCTCCTTCTTTGGTTCCAGCCAATTTAGATTCTAAGGCAGAAGGCAAGAGGGTTGTCTCCAATGGTTCTGAAAAAAAGGTTACCAAACCAAAGGATATGAAGTGGGAGTTTGGCAATTTGGATGCTTCAAATCTCAACTCCAAAGGAACTGAGAGTACTGGATTTGGGGACATGACCATGGTTTCCGTTCAGGGGAATGATAAGAAGGCCGAGCTTGATACTAATTCTGCATTTGAGGACAATGGAATAGATGATGATAGAAATAAGAAGTACACTTCAATCAAGGCAAAGTATTTGGATTCTGAAGTGAAGGCAAGTTCTTCAAAGAGTTGGGTGAAGAACAAGTCCCCAGAAGCTGAATCGAGCAAAAGCTCCAACAAGAGAGGAAAATTTGAGTGTACTACTTGCAAGAAAATCTTCCACTCTTACCAAGCACTTGGAGGTCATAGAGCTAGTCACAAGAAGATCAAGGGATGCTTTGCTTCAAGAAATGAGAGCAGTGAAAACAGCACTGAGTTCGAAGCTGACCTCTCCCCTGACCCAACAACAGAAAGTAAGCTCCTGAAGAATGAATATGTTGAAGAACATGAAATGGTTACTGTTACTACTGCTACTGCTACTGGTTTTGACAATGAGGAAGAGAGAGAGAGAGAGTCCAAAAAGGGGAAAGGTCATGAGTGCCCAATTTGCCTCAAGGTTTTTCCATCTGGACAAGCCTTGGGTGGTCACAAGAGATCTCATCACTTGCCTAGTGGGTCTGAGATTACTAGAAACTGTCAAAGTCAAACAGTTGTACTTGGGGGAGAAGCCCCAGAAATAAGGGACTTTTTTGATCTTAATCTTCCTGCTTCTACAGAGGAAGAAGGTAACAGCCATGGACGTGCTGAGCCTTACAAACCTTGGTGGGTAGTAGGAGGCAGCCACAAGCAAGAGGCACTCGTAGGCCTCATTTCTAACTAA 1617 0.4533 MEEDQEVKHLCKFCSKSFPCGRSLGGHMRSHVANVSTETEKLSFFSNNNGGGDRDTGIMGSEGGTSNGGYGLRENPKKTSRFTDSIEDTMLVLDKLCKECGKGFHSWKALFGHMKCHSERVSQNNSSLLEDQDSWTENTNGSQKMVLDDSHSDDEATAPNRRRRSKRGRTRYVAPSTSSVSFVSESEQEQEEVAMSLMMLSRDLSPWCGLSSVNSLHFESPSLVPANLDSKAEGKRVVSNGSEKKVTKPKDMKWEFGNLDASNLNSKGTESTGFGDMTMVSVQGNDKKAELDTNSAFEDNGIDDDRNKKYTSIKAKYLDSEVKASSSKSWVKNKSPEAESSKSSNKRGKFECTTCKKIFHSYQALGGHRASHKKIKGCFASRNESSENSTEFEADLSPDPTTESKLLKNEYVEEHEMVTVTTATATGFDNEEERERESKKGKGHECPICLKVFPSGQALGGHKRSHHLPSGSEITRNCQSQTVVLGGEAPEIRDFFDLNLPASTEEEGNSHGRAEPYKPWWVVGGSHKQEALVGLISN* 539
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phac9g03180 538 SUPERFAMILY beta-beta-alpha zinc fingers 96 372 IPR036236 -
Phac9g03180 538 ProSitePatterns Zinc finger C2H2 type domain signature. 97 117 IPR013087 -
Phac9g03180 538 ProSitePatterns Zinc finger C2H2 type domain signature. 11 31 IPR013087 -
Phac9g03180 538 ProSiteProfiles Zinc finger C2H2 type domain profile. 9 36 IPR013087 -
Phac9g03180 538 ProSiteProfiles Zinc finger C2H2 type domain profile. 95 122 IPR013087 -
Phac9g03180 538 Gene3D Classic Zinc Finger 1 121 - -
Phac9g03180 538 MobiDBLite consensus disorder prediction 44 78 - -
Phac9g03180 538 ProSiteProfiles Zinc finger C2H2 type domain profile. 350 377 IPR013087 -
Phac9g03180 538 Pfam C2H2-type zinc finger 444 467 - -
Phac9g03180 538 Pfam C2H2-type zinc finger 9 31 - -
Phac9g03180 538 Pfam C2H2-type zinc finger 97 118 - -
Phac9g03180 538 Pfam C2H2-type zinc finger 350 374 - -
Phac9g03180 538 PANTHER C2H2-LIKE ZINC FINGER PROTEIN 1 521 - -
Phac9g03180 538 Gene3D Classic Zinc Finger 347 466 - -
Phac9g03180 538 SMART c2h2final6 350 372 IPR013087 -
Phac9g03180 538 SMART c2h2final6 95 117 IPR013087 -
Phac9g03180 538 SMART c2h2final6 444 466 IPR013087 -
Phac9g03180 538 SMART c2h2final6 9 31 IPR013087 -
Phac9g03180 538 ProSiteProfiles Zinc finger C2H2 type domain profile. 444 466 IPR013087 -
Phac9g03180 538 ProSitePatterns Zinc finger C2H2 type domain signature. 352 372 IPR013087 -
Phac9g03180 538 MobiDBLite consensus disorder prediction 147 161 - -
Phac9g03180 538 MobiDBLite consensus disorder prediction 127 146 - -
Phac9g03180 538 MobiDBLite consensus disorder prediction 171 185 - -
Phac9g03180 538 SUPERFAMILY beta-beta-alpha zinc fingers 6 33 IPR036236 -
Phac9g03180 538 MobiDBLite consensus disorder prediction 127 185 - -
Phac9g03180 538 MobiDBLite consensus disorder prediction 326 347 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phac9g03180 Phac-Chr9 31273148 31276072 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Phac9g03180 337 510 C2H2 Transcription Factor Family AT2G45120 39.205 2.45e-25 104
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Phac9g03180 zf-C2H2_6 1.5e-12 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Phac9g03180 - - vra:106757260 916.761