Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phac9g03168 ATGGTGGGTGGGACTGTCTTTTCCGCTGCTTCAAATTTAACCGCTTTGCTTTCCAACCAAACACCTCCTTCAGCCTCTCAGCCTATCGATTCTCTTTTCCACTCTTCTTCTTCTTCCCCTTTTTTCGGTTCAAGATCTATAGTGAGCTTTGGAGATGTTCAAGGGGGGAAAGGGTGCAACGAGTCGTTCTTCCTGCCTTATGATGATAATGGGGATGAGGACACGGACGAGTACTTTCATCAGCCTGAGAAAAAACGCAGGCTTTCCGTTGAGCAAGTGCAGTTTCTTGAGAAGAGCTTTGATGAGGAGAATAAGCTCGAACCCGAGAGGAAGATTCGGCTAGCTAAAGAACTAGGGTTGCAGCCGCGGCAGGTGGCGATTTGGTTTCAGAACCGCCGGGCGCGGTGGAAGACCAAGCAGATGGAGAAGGATTATGATTCCCTGCAGGCTTGCTATGATGATCTCAAGACCAACTATGATGATCTTCTCAGGGAAAAGGATAAACTCAAAGCTGAGGTAGCAAAGCTCACTGAGAAGGTGCTTGGGAGAGAAAAAGTGGAGAAGGGGAACTTTGGAAAGGCTGAAACCAAGGGATTTTTTCAGGAGCCGGTGCAGAAGTCTATGATTGATTCAGCTTCTGAGGGTGAAGGGTCCAAAGTGTCCATCGGAGCTTGTAAACGGGAAGACATTAGTTCAGCGAAGAGTGAGATGTTTGATTCATCAGAAAGCCCACGTTACACTGATGGAGTGCACTCTGCTCTCCTTGAGACCGGTGACTCTTCTTATGTGTTTGAACCTGATCACTCTGATGTGTCTCAGGATGAAGGAGATAACCTGAGCATGACGCTTTTGCCTCATTACATGTTTCCCAAACTTGAAGATGTTGGTTACTCCGACCGGCCTCATAGTTCATGTCATTTTGGAATTCCTGAGGAAGATCAAGCCATTTGGTCTTGGTCTTACTGA 966 0.472 MVGGTVFSAASNLTALLSNQTPPSASQPIDSLFHSSSSSPFFGSRSIVSFGDVQGGKGCNESFFLPYDDNGDEDTDEYFHQPEKKRRLSVEQVQFLEKSFDEENKLEPERKIRLAKELGLQPRQVAIWFQNRRARWKTKQMEKDYDSLQACYDDLKTNYDDLLREKDKLKAEVAKLTEKVLGREKVEKGNFGKAETKGFFQEPVQKSMIDSASEGEGSKVSIGACKREDISSAKSEMFDSSESPRYTDGVHSALLETGDSSYVFEPDHSDVSQDEGDNLSMTLLPHYMFPKLEDVGYSDRPHSSCHFGIPEEDQAIWSWSY* 322
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phac9g03168 321 Pfam Homeobox associated leucine zipper 139 180 IPR003106 GO:0006355|GO:0043565
Phac9g03168 321 CDD homeodomain 84 140 IPR001356 GO:0003677
Phac9g03168 321 Pfam Homeodomain 84 137 IPR001356 GO:0003677
Phac9g03168 321 SMART HOX_1 82 143 IPR001356 GO:0003677
Phac9g03168 321 ProSiteProfiles 'Homeobox' domain profile. 79 139 IPR001356 GO:0003677
Phac9g03168 321 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN 71 230 IPR045224 GO:0003700
Phac9g03168 321 ProSitePatterns 'Homeobox' domain signature. 114 137 IPR017970 GO:0000981|GO:0006355
Phac9g03168 321 FunFam homeobox-leucine zipper protein ATHB-6-like 87 133 - -
Phac9g03168 321 Gene3D - 134 182 - -
Phac9g03168 321 PRINTS Lambda-repressor HTH signature 110 119 IPR000047 GO:0003677
Phac9g03168 321 PRINTS Lambda-repressor HTH signature 119 135 IPR000047 GO:0003677
Phac9g03168 321 Gene3D - 87 133 - -
Phac9g03168 321 SUPERFAMILY Homeodomain-like 70 141 IPR009057 -
Phac9g03168 321 Coils Coil 145 179 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phac9g03168 Phac-Chr9 31121060 31123725 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Phac9g03168 82 243 Homeobox Transcription Factor Family AT3G01470 50.000 2.54e-47 159
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Phac9g03168 Homeodomain 1.1e-16 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Phac9g03168 - - gmx:732618 515.383