Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phac9g03100 ATGGCTTCGTCTCTTTCCCCTTCTCCCTCTTCCCTCGACCAAACCCTTCGCGACGTCGACGACTACGTTTTGGAAAATAAGTCAGAAGATTTGTCATGGGACACAATACATTACGTTTACGAGCTTGTGCAGAATGGGAATGCTGCGTTTCGAGAGAACAAAATGGAAGAGGCAATCAATTTTTACTCCAGAGCCAATAACATCAAATCAGGTGATCCAATCATCCTCAGCAATCGAAGTGCAGCTTATATTAGGATTAGCCAATATTTCATTAGCAGAACACCATCATCTTCAGAATGTAGGCCATTGAGTGGGCTTGAACCCACAACACTTGCTGAATTGGCTTTGAAGGATGCTGAAAAGCTTGTTGAACTCCAAAGTAATGTAGCAAAATCATATCTTTTAAAGGCCAATGCTCTTCTCCTGTTAGAGAAATATGAAAAAGCCCGGGATGTTATTCTTTCAGGCCTTCAAGTTGATCCTTTTAGTAATTCTCTTCGGGCTTCTCTTCAAAATATAGAAAGAGTTTCATCTAGTTCAACAGGGACGAGTACACATGGACAACCCGAGCGTAATGATGATTTTGATTGCACTCTCTGCCTGAAGTTACTGTACGAACCTGTCACAACCCCTTGTGGACATTCTTTTTGTCGCTCATGTCTATTTCAGTCAATGGATCGTGGAAACAGATGCCCATTGTGCAGGACAGTTCTGTTTATTAGTCCCAGAACATGTTCCATCAGTGTGACGTTGAAGAACATCATACAAAAGAACTTTCCTGAGGAATATGCTGAAAGGAAGGAAGAGCAGGATGGTTTAATCAATGCTGGTGTTGATTTACTCCCTCTTTTTGTCATGGATGTTGTCATACCATGTCAAAGGTTTCCGCTCAACATATTTGAACCTCGGTATAGACTCATGGTAAGAAGAATAATGGAAGGCAATCATCGGATGGGAATGGCTATACTTGATTCTTCGTCAGGTTCCTTAGCTGAGTTTGCCTGTGAAGTAGAAATCACCGAGTGTGAACCACTTCCAGATGGTCGTTTTTATATAGAGATTGAAAGTCGTAGGAGATTTCGTATCATCCAATCGTGGGATCAAGATGGGTATCGTGTTGCCGAGGTTGAATGGATGCAGGATATTATGCCACCAGAAGGGAGTACTGAAAGAGAGACTGTAAGTTCTCTAAAATTTTGGTATGAATGTGTTTGTAAGCTCACTGTCATGTAG 1233 0.4169 MASSLSPSPSSLDQTLRDVDDYVLENKSEDLSWDTIHYVYELVQNGNAAFRENKMEEAINFYSRANNIKSGDPIILSNRSAAYIRISQYFISRTPSSSECRPLSGLEPTTLAELALKDAEKLVELQSNVAKSYLLKANALLLLEKYEKARDVILSGLQVDPFSNSLRASLQNIERVSSSSTGTSTHGQPERNDDFDCTLCLKLLYEPVTTPCGHSFCRSCLFQSMDRGNRCPLCRTVLFISPRTCSISVTLKNIIQKNFPEEYAERKEEQDGLINAGVDLLPLFVMDVVIPCQRFPLNIFEPRYRLMVRRIMEGNHRMGMAILDSSSGSLAEFACEVEITECEPLPDGRFYIEIESRRRFRIIQSWDQDGYRVAEVEWMQDIMPPEGSTERETVSSLKFWYECVCKLTVM* 411
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phac9g03100 410 Pfam Zinc finger, C3HC4 type (RING finger) 197 234 - -
Phac9g03100 410 Gene3D Tetratricopeptide repeat domain 29 179 IPR011990 GO:0005515
Phac9g03100 410 ProSiteProfiles Lon N-terminal domain profile. 278 410 IPR003111 -
Phac9g03100 410 SMART ring_2 197 234 IPR001841 -
Phac9g03100 410 ProSiteProfiles Zinc finger RING-type profile. 197 235 IPR001841 -
Phac9g03100 410 SUPERFAMILY RING/U-box 192 260 - -
Phac9g03100 410 CDD RING-HC_LONFs_rpt2 194 238 - -
Phac9g03100 410 ProSitePatterns Zinc finger RING-type signature. 212 221 IPR017907 -
Phac9g03100 410 PANTHER RING FINGER PROTEIN 127 24 396 - -
Phac9g03100 410 Pfam ATP-dependent protease La (LON) substrate-binding domain 281 392 IPR003111 -
Phac9g03100 410 SUPERFAMILY TPR-like 38 170 IPR011990 GO:0005515
Phac9g03100 410 SMART tpr_5 39 72 IPR019734 GO:0005515
Phac9g03100 410 SMART tpr_5 130 163 IPR019734 GO:0005515
Phac9g03100 410 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 183 276 IPR013083 -
Phac9g03100 410 Gene3D - 279 381 IPR046336 -
Phac9g03100 410 SUPERFAMILY PUA domain-like 281 394 IPR015947 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phac9g03100 Phac-Chr9 30090210 30100102 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Phac9g03100 183 238 C3H Transcription Factor Family AT1G74990 35.593 1.34e-08 51.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Phac9g03100 - - gmx:100802277 686.026