Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phac9g03077 ATGAAGGTGGAAGGGTCCAGCGTTGAAAATGATGGTTTCAAAGCTGAAGCAGAAACAAGTTCTGTGAGTGGTAACAAGTCAAGTGAACAAAGCACTATACCTTGTGAGGCACCTAAACAGGAATATATTCACGTGAGAGCAAGAAGGGGCCAAGCTACTGATAGCCACAGTCTAGCAGAAAGAGCAAGAAGAGAAAAAATCAGTGAGAGAATGAAAATTCTTCAGGATTTGGTTCCAGGGTGTAACAAGGTAAATGGTAAAGCACTGGTCCTAGATGAGATAATCAATTACATACAGTCGCTGCAGCGTCAGGTTGAGTTCCTGTCTATGAAGCTTGAAGCAGTTAATTCAAGGATGAACATGAGCCCTAACATAGATGGGTTGCCTTTAAAAGATGTTGGTGGTACTCCACGATTCGACATTGCTGGAATGGTATTTGGATCACAGGCAGCAAGAGGGTATGCTCAGGGATCACATCATGGATGGCTGCATATGCAGATAGGCGGTGGTTTGAGAGACCAGCATAATTCTGAGAAATCTCATTGGGAATGA 552 0.4348 MKVEGSSVENDGFKAEAETSSVSGNKSSEQSTIPCEAPKQEYIHVRARRGQATDSHSLAERARREKISERMKILQDLVPGCNKVNGKALVLDEIINYIQSLQRQVEFLSMKLEAVNSRMNMSPNIDGLPLKDVGGTPRFDIAGMVFGSQAARGYAQGSHHGWLHMQIGGGLRDQHNSEKSHWE* 184
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phac9g03077 183 Gene3D - 48 125 IPR036638 GO:0046983
Phac9g03077 183 PANTHER STEROL REGULATORY ELEMENT-BINDING PROTEIN 16 157 IPR024097 GO:0006355
Phac9g03077 183 MobiDBLite consensus disorder prediction 1 38 - -
Phac9g03077 183 ProSiteProfiles Glutamine amidotransferase type 1 domain profile. 87 183 - -
Phac9g03077 183 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 49 121 IPR036638 GO:0046983
Phac9g03077 183 Coils Coil 98 118 - -
Phac9g03077 183 MobiDBLite consensus disorder prediction 13 35 - -
Phac9g03077 183 SMART finulus 57 107 IPR011598 GO:0046983
Phac9g03077 183 Pfam Helix-loop-helix DNA-binding domain 55 102 IPR011598 GO:0046983
Phac9g03077 183 FunFam Basic helix-loop-helix transcription factor 48 120 - -
Phac9g03077 183 CDD bHLH_AtBPE_like 41 128 - -
Phac9g03077 183 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 51 101 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phac9g03077 Phac-Chr9 29842968 29846788 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Phac9g03077 26 171 Basic Helix-Loop-Helix Transcription Factor Gene Family AT5G62610 60.274 5.82e-54 171
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Phac9g03077 HLH 7.5e-09 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Phac9g03077 - - vra:106758689 295.819