Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phac9g03074 ATGGATCCTCCTCTCATCACCGACTCCACATTCTCCCCCGCTTACACCCTCTCCGATATTTGGCTCCGAACACCCCCTTTTCCCCCCTCCGATCACCACTTCTCCAAGAATGATTCTGGTAGCAATAAACGGATGAAGGTGGAAGGGTCCAGCGTTGAAAATGATGGTTTCAAAGCTGAAGCAGAAACAAGTTCTGTGAGTGGTAACAAGTCAAGTGAACAAAGCACTATACCTTGTGAGGCACCTAAACAGGAATATATTCACGTGAGAGCAAGAAGGGGCCAAGCTACTGATAGCCACAGTCTAGCAGAAAGAGCAAGAAGAGAAAAAATCAGTGAGAGAATGAAAATTCTTCAGGATTTGGTTCCAGGGTGTAACAAGGTAAATGGTAAAGCACTGGTCCTAGATGAGATAATCAATTACATACAGTCGCTGCAGCGTCAGGTTGAGTTCCTGTCTATGAAGCTTGAAGCAGTTAATTCAAGGATGAACATGAGCCCTAACATAGATGGGTTGCCTTTAAAAGATTTGACAAAGCTCAATTGA 546 0.4432 MDPPLITDSTFSPAYTLSDIWLRTPPFPPSDHHFSKNDSGSNKRMKVEGSSVENDGFKAEAETSSVSGNKSSEQSTIPCEAPKQEYIHVRARRGQATDSHSLAERARREKISERMKILQDLVPGCNKVNGKALVLDEIINYIQSLQRQVEFLSMKLEAVNSRMNMSPNIDGLPLKDLTKLN* 182
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phac9g03074 181 Gene3D - 92 169 IPR036638 GO:0046983
Phac9g03074 181 FunFam Basic helix-loop-helix transcription factor 92 164 - -
Phac9g03074 181 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 95 145 IPR011598 GO:0046983
Phac9g03074 181 Pfam Helix-loop-helix DNA-binding domain 99 146 IPR011598 GO:0046983
Phac9g03074 181 CDD bHLH_AtBPE_like 85 172 - -
Phac9g03074 181 SMART finulus 101 151 IPR011598 GO:0046983
Phac9g03074 181 Coils Coil 142 162 - -
Phac9g03074 181 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 93 165 IPR036638 GO:0046983
Phac9g03074 181 MobiDBLite consensus disorder prediction 36 55 - -
Phac9g03074 181 MobiDBLite consensus disorder prediction 57 79 - -
Phac9g03074 181 MobiDBLite consensus disorder prediction 26 83 - -
Phac9g03074 181 PANTHER STEROL REGULATORY ELEMENT-BINDING PROTEIN 38 176 IPR024097 GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phac9g03074 Phac-Chr9 29842968 29846788 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Phac9g03074 40 180 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G59640 68.794 5.53e-55 175
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Phac9g03074 HLH 7.4e-09 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Phac9g03074 - - vra:106758689 313.538