Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phac9g03041 ATGGGTGGCAATGGAAAGCACAGATGGAAAATCTCTTTCCACCGTTCCTCTTCCCAATCCTCAAAGATGGACCCTAAGCTCCCTCCCAAGGAATTTACGTGCCCCATTTCCGGCTCCTTAATGTCCGACCCGGTTGTCGTCGCTTCGGGCCAAACCTTCGAACGCCTCGCCGTTCAAGTCTGCAAGGACCTCAACTTCTCCCCCAAGCAAGAAGACGGGACTCGACCCGATTTCTCAACAGTAATCCCTAACTTAGCCCTCAAAACCACAATCCTCAACTGGTGCGACAAATTCCACACCCAACACCCGCGGCCACCCGATTTCGCCTCCCTCCAGCGCCACGTCACACAAGCAATGGCCGTTTCAGGGGAACAAAACGATCAGGAAGAACAAGAACAACGACTTAGGGTTTCGGAAAAGGTGCTTCTCGACGCGGTCGCGGATAACCCCCCCGTCATTTTCTCCCACGCCGCCACTGAGTTAGGCCCCCGTGCCAACCACTTCAACTCGGGATCCTCCGAGGAATCGGTCATCATTCCGCACAGTCCGGGAACGCCGTTACCCTTTACCATTCGTCCAACCTGCTTCTCCTCCTCCTCCTCCTCGTGCGAGATCGAAATTGAAAACCCTAGCGCGCCGGTTACAGAGGAAGAGGAAGGAATATTGAAGAAATTGAAGAGCAGCGAGGTGTTTGAGCAAGAAGAAGGCGTAATCGCGCTGAGGAAGATGACGAGGAGCAAAGAGGAGTCTAGGTCCTTGCTCTGCACGCCTCGGGTTCTGCTGGCGCTGCGCGGTTTGATCGCTTCGCGGTACGGCGTTGTTCAGGTAAACGCGGTGGCGTCGCTGGTCAACCTCTCGCTGGAGAAGCAGAACAAGGTGAAGATCGTGAGGTCAGGGTTTGTTCCGTTTTTAATCGATGTTTTGAAGGGGGGTTTGGATGAGTCACAGGAGCACGCTGCGGGCGCGCTTTTCAGTTTAGCCTTGGATGATGATAATAAAATGGCCATTGGCGTTCTGGGCGCGCTGCAACCGCTGATGCACGCGCTGCGTGCTGAGTCCGAGAGGACTCGTCACGACTCGGCACTCGCGTTGTATCATCTGAGCCTTGTTCAGAGTAACCGGGTGAAGCTGGTGAAACTCGGGGCGGTTCCGACGCTTCTGTCCATGGTGGTGGCGGGGAATTTGGCGAGCCGGGTGCTGCTGATTCTGTGCAACCTGGCGGTGTGCACGGAGGGACGCACGACAATGCTGGACGCGAACGCGGTAGAGTGTCTGGTGGGGCTATTGAGGGCGAACGAGTTGGACTCGGAGGCGACTCGAGAGAATTGCGTGGCGGCACTGTTCGCACTTAGCCATAGGAGCTTGAGGTTCAAAGGGTTGGCGAAGGACGCGAGGGTTGTGGAGGTTTTGAAGGAGGTTGAACTAACAGGAACGGAGAGGGCCAGGGAGAAGGCTAGGAAGGTATTGCACATGTTGAGAACTTTGGGCGATGGAGATGATGATGAAGGTGACGACTTTTACGACTCGGCCGGGTTGACGCGGAATCGTTACCGACTTGGTGCTGCCAGGAACCACAACATCGTCAACACGACCACGTTTTAG 1602 0.5562 MGGNGKHRWKISFHRSSSQSSKMDPKLPPKEFTCPISGSLMSDPVVVASGQTFERLAVQVCKDLNFSPKQEDGTRPDFSTVIPNLALKTTILNWCDKFHTQHPRPPDFASLQRHVTQAMAVSGEQNDQEEQEQRLRVSEKVLLDAVADNPPVIFSHAATELGPRANHFNSGSSEESVIIPHSPGTPLPFTIRPTCFSSSSSSCEIEIENPSAPVTEEEEGILKKLKSSEVFEQEEGVIALRKMTRSKEESRSLLCTPRVLLALRGLIASRYGVVQVNAVASLVNLSLEKQNKVKIVRSGFVPFLIDVLKGGLDESQEHAAGALFSLALDDDNKMAIGVLGALQPLMHALRAESERTRHDSALALYHLSLVQSNRVKLVKLGAVPTLLSMVVAGNLASRVLLILCNLAVCTEGRTTMLDANAVECLVGLLRANELDSEATRENCVAALFALSHRSLRFKGLAKDARVVEVLKEVELTGTERAREKARKVLHMLRTLGDGDDDEGDDFYDSAGLTRNRYRLGAARNHNIVNTTTF* 534
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phac9g03041 533 Pfam Armadillo/beta-catenin-like repeat 329 368 IPR000225 GO:0005515
Phac9g03041 533 SUPERFAMILY RING/U-box 14 104 - -
Phac9g03041 533 PANTHER U BOX DOMAIN-CONTAINING 21 492 - -
Phac9g03041 533 SMART Ubox_2 31 94 IPR003613 GO:0004842|GO:0016567
Phac9g03041 533 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 28 101 IPR013083 -
Phac9g03041 533 ProSiteProfiles U-box domain profile. 27 101 IPR003613 GO:0004842|GO:0016567
Phac9g03041 533 FunFam RING-type E3 ubiquitin transferase 9 102 - -
Phac9g03041 533 SUPERFAMILY ARM repeat 221 492 IPR016024 -
Phac9g03041 533 FunFam RING-type E3 ubiquitin transferase 216 492 - -
Phac9g03041 533 Pfam U-box domain 29 96 IPR003613 GO:0004842|GO:0016567
Phac9g03041 533 Gene3D - 213 512 IPR011989 -
Phac9g03041 533 MobiDBLite consensus disorder prediction 1 28 - -
Phac9g03041 533 SMART arm_5 288 328 IPR000225 GO:0005515
Phac9g03041 533 SMART arm_5 329 369 IPR000225 GO:0005515
Phac9g03041 533 SMART arm_5 409 452 IPR000225 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phac9g03041 Phac-Chr9 29553671 29556081 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Phac9g03041 1 533 U-box Gene Family AT5G65200 56.106 0.0 572
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Phac9g03041 - - gmx:100784564 870.922
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phac9g03041 9 29553671 29556081 Phac9g03041 9 29553671 29556081 ECH