Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phac9g02980 ATGGCAATTACAGGCGTTAGTTTCAAATGGTTCGATGGGTTTTTCCTGTCTGTGCTCTTCACCAACATAGCTATTGTGGTAATTAATTGGAAGTTATACCAATCTTGTACATGCCCTTTGCATATATGGACTGTGGTTGATTACACTGTCGTTTTCACTTTCCGACTTTTGATGTTCATTGATAATGGACTTGCTTCAGGAATGGATGCTTACTCCAAAGGTTATGTACAGTTGTCTAGAGGGGGTCAAAAATGGAGCTTCCTTATTTGGTTAGTTTTTAGCTATTGTGGACTCCTTTGTATTGCTTGTGTGGCATTAGGGAAGGTTAGTGCTTCTCTCTTATTATTCATTACATGTTTTCATGACTTGTTTTCATTTTTCATGTGGTTGAAACGAAGACAAATACACGTGTTAAATGCTACAGAGGGTATCCATATATATGCATTTGGGATTCTAATTGAAATGATCCAAGTACCTGATTGGGTATTTGAAGCTGCAAGTCAAGAATCAAGGAGCATGACCCAAAATGTTACATTTCATCGTGGACGTTACCTAAATCAAACCCAGAAAGACGCAATTGAATCTTCAATTCAAGAACTTCCAACATTTACGATAAATGTGGTTCCTACTAATTGCAATGAATGCCTCATCTGCTTAGAAGAGTTTTGTGTAGGAAATCAGGTTCGTGGCTTGCCCTGTTCTCACAATTTCCATGTTGAATGTATAGATGTGTGGCTTCGGCTTAATGTGAGTTGTCCTCGATGTCGTTGCTCAGTATTTCCTAATCTTGATCTTAATGCTCTATCAGATATCCCTTACGAGTTTGAACAGTCTTTTCAGACTATCATGGCAAATATACACGAGACAGATCAAACTCCTAGTTAA 885 0.3808 MAITGVSFKWFDGFFLSVLFTNIAIVVINWKLYQSCTCPLHIWTVVDYTVVFTFRLLMFIDNGLASGMDAYSKGYVQLSRGGQKWSFLIWLVFSYCGLLCIACVALGKVSASLLLFITCFHDLFSFFMWLKRRQIHVLNATEGIHIYAFGILIEMIQVPDWVFEAASQESRSMTQNVTFHRGRYLNQTQKDAIESSIQELPTFTINVVPTNCNECLICLEEFCVGNQVRGLPCSHNFHVECIDVWLRLNVSCPRCRCSVFPNLDLNALSDIPYEFEQSFQTIMANIHETDQTPS* 295
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phac9g02980 294 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 177 261 IPR013083 -
Phac9g02980 294 Pfam Ring finger domain 213 256 IPR001841 -
Phac9g02980 294 SUPERFAMILY RING/U-box 197 264 - -
Phac9g02980 294 PANTHER E3 UBIQUITIN-PROTEIN LIGASE SIS3 78 110 IPR044793 GO:0004842|GO:0010182
Phac9g02980 294 SMART ring_2 215 255 IPR001841 -
Phac9g02980 294 ProSiteProfiles Zinc finger RING-type profile. 215 256 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phac9g02980 Phac-Chr9 29058020 29063356 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Phac9g02980 67 271 C3H Transcription Factor Family AT3G47990 56.796 1.00e-81 247
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Phac9g02980 K16284 - gmx:100786854 380.178