Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phac9g02945 ATGAACTTGGTTTTTCCTTTTGAGAAACAAAAAGAAATGGAGAACAACCTCTACAACTTTCACTATTCAGCAACTTACTCAGGCCAGTCAACAACAACGGCTCCACCTCCGCCCTCTAAGTCTGTCTTTGGGAAGGAAGAGGATGTTTCAGAAGCACTTCGTGACAAAGTTGCTTCTCATCCTCTATTTCCTCACCTCCTCCATGCCTACATCGATTGCCACAAGGTGGGAGCGCCACAAGATATGGCAGACCTATTTGAAGGAATCAAAGGAGAGCATAGTGGGGTGTGTCAGATATCTGACTCTAAATCTGATCATGGCTTCTTGGGTGCTGATCCCGAGCTTGATGATTTCATGGGAACGTTTTGCGATTTGTTGGTGAAGTACAAATCAGATCTTTCAAGACCCTTTAACGAGGCATCCATGTTCCTCAGCCATATGGAAACTCAGCTTCACTTCATCTGCAATGATCTTGCTATCATAGACAAAACTCTTCCTCAACCTGCAGGTGATGTTGGTGGATCATCTGGGAAAGATAGTATGAAGAGAATTGAAAGCAAGAAGACAAATGAGGTTCAAGAACTGAAGGATAATCTTCTAAGTAGATATAGTGGTTACATTACTAATCTGAAGCATGAATTTTCGAGAAAGAAGAAGAAAGAAAAGCTACCAAAAGAAGCAAAGAAAATCTTACTTGCATGGTGGAATATTCACTTTAAATGGCCATACCCAACGGATGCTGATAAGGTTGCCCTAGCTGAATGGACTGGTTTGGACCAGAAGCAAGTAAATAACTGGTTTATAAACCAAAGGAAACGACATTGGAAACCATCAGAAGAAATGCAGGTTGCAATTTTGGATGGACTCTATGAACCACTTCACGAGTGA 888 0.4167 MNLVFPFEKQKEMENNLYNFHYSATYSGQSTTTAPPPPSKSVFGKEEDVSEALRDKVASHPLFPHLLHAYIDCHKVGAPQDMADLFEGIKGEHSGVCQISDSKSDHGFLGADPELDDFMGTFCDLLVKYKSDLSRPFNEASMFLSHMETQLHFICNDLAIIDKTLPQPAGDVGGSSGKDSMKRIESKKTNEVQELKDNLLSRYSGYITNLKHEFSRKKKKEKLPKEAKKILLAWWNIHFKWPYPTDADKVALAEWTGLDQKQVNNWFINQRKRHWKPSEEMQVAILDGLYEPLHE* 296
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phac9g02945 295 SMART KNOX1_2 51 95 IPR005540 GO:0003677|GO:0005634
Phac9g02945 295 ProSitePatterns 'Homeobox' domain signature. 252 275 IPR017970 GO:0000981|GO:0006355
Phac9g02945 295 SMART ELK_2 194 215 IPR005539 GO:0003677
Phac9g02945 295 MobiDBLite consensus disorder prediction 169 188 - -
Phac9g02945 295 Pfam Homeobox KN domain 234 273 IPR008422 GO:0003677|GO:0006355
Phac9g02945 295 CDD homeodomain 230 278 IPR001356 GO:0003677
Phac9g02945 295 Pfam KNOX2 domain 110 155 IPR005541 GO:0003677|GO:0005634
Phac9g02945 295 Gene3D - 212 284 - -
Phac9g02945 295 Pfam ELK domain 194 215 IPR005539 GO:0003677
Phac9g02945 295 SUPERFAMILY Homeodomain-like 216 285 IPR009057 -
Phac9g02945 295 SMART HOX_1 216 281 IPR001356 GO:0003677
Phac9g02945 295 Pfam KNOX1 domain 53 92 IPR005540 GO:0003677|GO:0005634
Phac9g02945 295 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 57 282 - -
Phac9g02945 295 ProSiteProfiles 'Homeobox' domain profile. 214 277 IPR001356 GO:0003677
Phac9g02945 295 ProSiteProfiles ELK domain profile. 194 214 IPR005539 GO:0003677
Phac9g02945 295 SMART KNOX2_2 105 156 IPR005541 GO:0003677|GO:0005634
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phac9g02945 Phac-Chr9 28381063 28392636 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Phac9g02945 15 287 Homeobox Transcription Factor Family AT1G23380 43.210 2.03e-75 232
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-KNOX Phac9g02945 KNOX2 2.5e-21 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Phac9g02945 - - gmx:102662019 409.453