Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phac9g02889 ATGAGTGCTCCCATGGACACAGAGATCACAACCTACGAAAATGGCGCTGTTCCCCAACACTCACTTCCCGAGGACAAAGTTCTTGTCCCTGTCGAGGTAACCCTAAAACCTTCCAGCACCGCTAAAATCGAAGATGTTCGGTCCGCCGTTGAAGGGATGCTTGAAAAGAGGAGTTTGAGCTATATCGATGGACCCATTCCGGTGCCTCTTGATGAGGCGTTTCTCGTTGATAACGTTGAAAGAATTTGCGTTTGCGGATGTGATACTGATGATGGGAGGCACAATGATAATGTTCTTTTGTTCTGGCAAGTCAAGCCTATTGTACATGTTTTTCAGCTTAGCGAGGAAGGTCCATGTGAGGATATAAGCTCTGATGGGCAGTCTTCTAGCTTCAATGAATGGATTCTTCCTGCAAAAGAATTTGATGGCATGTGGGAAAGCTTAATATATGAATCTGGTCTAAAGCAACGGTTATTACGTTATGCAGCAAGTGCTTTGCTCTTTACTGAAAAAGGGGTTGATCCATTCCTTGTTTCATGGAATCGCATAATTCTGTTACATGGACCTCCTGGGACTGGAAAGACATCTTTATGTAAAGCATTAGCTCAGAAATTAGCAATTCGATTCAATTCAAGATACCCTCAGTCCCAGCTTATTGAAGTGAATGCACATTCTTTGTTCAGTAAATGGTTCTCCGAAAGTGGCAAGCTGGTAGCGAAACTTTTCCAAAAGATTCAAGAAATGGTAGAGGAAGAAAGCAATCTTGTATTTGTATTGATTGATGAAGTTGAAAGTCTTGCTGCTGCTAGAAAAGCTGCCCTATCTGGTTCTGAACCTTCTGATTCTATTCGGGTTGTCAATGCATTACTAACTCAGATGGACAAGTTAAAATCATCTCCTAATGTGATAATTCTAACCACTTCCAACATAACTGCAGCTATTGACATTGCTTTTGTCGATCGAGCTGATATCAAAGCATATGTTGGTCCCCCAACTCTTCAAGCTCGGTATGAAATATTAAGGTCCTGCTTGCAGGAACTGATACGTACAGGGATCTTGACTAGTTTACAGGATTGCAAGAATGTCATGCTTCCAAATTACGCTTGTGCAAAGGAGAGGTTGAACGCTCCAGATTTTCATGAGGGTGCTACATTCATGCAACTGTGCAAGCACTTATTGGAAACCGCGGAGGCATGTGAGGGAATGAGTGGAAGGTCTTTGAGAAAGCTTCCATTTTTAGCACATGCTGCACTTTCAAATCCTTTTGATTGTAACCCTGTTAAGTTCTTATGTACAATGGTAGAAACAGCAAAGAGGGAGCGTTCTGAGCTTCCTGACCAAAATAACTAA 1350 0.4215 MSAPMDTEITTYENGAVPQHSLPEDKVLVPVEVTLKPSSTAKIEDVRSAVEGMLEKRSLSYIDGPIPVPLDEAFLVDNVERICVCGCDTDDGRHNDNVLLFWQVKPIVHVFQLSEEGPCEDISSDGQSSSFNEWILPAKEFDGMWESLIYESGLKQRLLRYAASALLFTEKGVDPFLVSWNRIILLHGPPGTGKTSLCKALAQKLAIRFNSRYPQSQLIEVNAHSLFSKWFSESGKLVAKLFQKIQEMVEEESNLVFVLIDEVESLAAARKAALSGSEPSDSIRVVNALLTQMDKLKSSPNVIILTTSNITAAIDIAFVDRADIKAYVGPPTLQARYEILRSCLQELIRTGILTSLQDCKNVMLPNYACAKERLNAPDFHEGATFMQLCKHLLETAEACEGMSGRSLRKLPFLAHAALSNPFDCNPVKFLCTMVETAKRERSELPDQNN* 450
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phac9g02889 449 FunFam pachytene checkpoint protein 2 homolog 124 346 - -
Phac9g02889 449 Gene3D - 123 347 IPR027417 -
Phac9g02889 449 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 144 413 IPR027417 -
Phac9g02889 449 PRINTS ATP-dependent Clp protease ATP-binding subunit signature 184 202 IPR001270 GO:0005524
Phac9g02889 449 PRINTS ATP-dependent Clp protease ATP-binding subunit signature 298 312 IPR001270 GO:0005524
Phac9g02889 449 ProSitePatterns AAA-protein family signature. 302 321 IPR003960 GO:0005524|GO:0016887
Phac9g02889 449 PANTHER PACHYTENE CHECKPOINT PROTEIN 2 20 445 IPR044539 -
Phac9g02889 449 Pfam ATPase family associated with various cellular activities (AAA) 184 329 IPR003959 GO:0005524|GO:0016887
Phac9g02889 449 SMART AAA_5 180 332 IPR003593 GO:0016887
Phac9g02889 449 CDD RecA-like_Pch2-like 130 328 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phac9g02889 Phac-Chr9 27727109 27733651 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Phac9g02889 184 398 Calmodulin-binding Proteins AT3G56690 28.182 9.46e-14 72.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Phac9g02889 K22399 - gmx:100795009 829.32