Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phac9g02888 ATGAGTGCTCCCATGGACACAGAGATCACAACCTACGAAAATGGCGCTGTTCCCCAACACTCACTTCCCGAGGACAAAGTTCTTGTCCCTGTCGAGGTAACCCTAAAACCTTCCAGCACCGCTAAAATCGAAGATGTTCGGTCCGCCGTTGAAGGGATGCTTGAAAAGAGGAGTTTGAGCTATATCGATGGACCCATTCCGGTGCCTCTTGATGAGGCGTTTCTCGTTGATAACGTTGAAAGAATTTGCGTTTGCGGATGTGATACTGATGATGGGAGGCACAATGATAATGTTCTTTTGTTCTGGCAAGTCAAGCCTATTGTACATGTTTTTCAGCTTAGCGAGGAAGGTCCATGTGAGGATATAAGCTCTGATGGGCAGTCTTCTAGCTTCAATGAATGGATTCTTCCTGCAAAAGAATTTGATGGCATGTGGGAAAGCTTAATATATGAATCTGGTCTAAAGCAACGGTTATTACGTTATGCAGCAAGTGCTTTGCTCTTTACTGAAAAAGGGGTTGATCCATTCCTTGTTTCATGGAATCGCATAATTCTGTTACATGGACCTCCTGGGACTGGAAAGACATCTTTATGTAAAGCATTAGCTCAGAAATTAGCAATTCGATTCAATTCAAGATACCCTCAGTCCCAGCTTATTGAAGTGAATGCACATTCTTTGTTCAGTAAATGGTTCTCCGAAAGTGGCAAGCTGGTAGCGAAACTTTTCCAAAAGATTCAAGAAATGGTAGAGGAAGAAAGCAATCTTGTATTTGTATTGATTGATGAAGTTGAAAGTCTTGCTGCTGCTAGAAAAGCTGCCCTATCTGGTTCTGAACCTTCTGATTCTATTCGGGTTGTCAATGCATTACTAACTCAGATGGACAAGTTAAAATCATCTCCTAATGTGATAATTCTAACCACTTCCAACATAACTGCAGCTATTGTACCGAATATTTTTTGCTCACCAAGCACCTCTTTGGGGCATCAGAGTCAAGTTGTTATAAATAAAGCACCGACTTTCGTTACCAGCATAGTAAAAAACAATACTATTTCCAGATCTGAAATTAGCATCACCTCAATGTAA 1083 0.4118 MSAPMDTEITTYENGAVPQHSLPEDKVLVPVEVTLKPSSTAKIEDVRSAVEGMLEKRSLSYIDGPIPVPLDEAFLVDNVERICVCGCDTDDGRHNDNVLLFWQVKPIVHVFQLSEEGPCEDISSDGQSSSFNEWILPAKEFDGMWESLIYESGLKQRLLRYAASALLFTEKGVDPFLVSWNRIILLHGPPGTGKTSLCKALAQKLAIRFNSRYPQSQLIEVNAHSLFSKWFSESGKLVAKLFQKIQEMVEEESNLVFVLIDEVESLAAARKAALSGSEPSDSIRVVNALLTQMDKLKSSPNVIILTTSNITAAIVPNIFCSPSTSLGHQSQVVINKAPTFVTSIVKNNTISRSEISITSM* 361
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phac9g02888 360 SMART AAA_5 180 328 IPR003593 GO:0016887
Phac9g02888 360 Pfam ATPase family associated with various cellular activities (AAA) 184 318 IPR003959 GO:0005524|GO:0016887
Phac9g02888 360 PANTHER PACHYTENE CHECKPOINT PROTEIN 2 20 314 IPR044539 -
Phac9g02888 360 FunFam pachytene checkpoint protein 2 homolog 124 321 - -
Phac9g02888 360 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 136 310 IPR027417 -
Phac9g02888 360 CDD RecA-like_Pch2-like 130 312 - -
Phac9g02888 360 PRINTS ATP-dependent Clp protease ATP-binding subunit signature 298 312 IPR001270 GO:0005524
Phac9g02888 360 PRINTS ATP-dependent Clp protease ATP-binding subunit signature 184 202 IPR001270 GO:0005524
Phac9g02888 360 Gene3D - 135 321 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phac9g02888 Phac-Chr9 27727109 27733651 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Phac9g02888 184 318 Calmodulin-binding Proteins AT3G56690 31.111 1.07e-11 64.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Phac9g02888 K22399 - gmx:100812167 581.252