Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phac9g02859 ATGTCTATCACTGCCACTGCCTTCAAGTCCCTCACCATGGCCGATTCGTGCCTCCTCTCTTCTCCCTCCTCTCTCTTCCACAACATAACCAAATCCCACGTCTTCTCACCTCCCTCCAAACCCCTCACACTCCAATTCTCATGCCTCAACTCCTCACCCTCGCTCTCTCTTTCCCTCGCTGCACGAACCCACCGTTCCCCCGTCCTCACCTACGTCGCCCAAACTTCCGATTGGGCCCAGCAAGAAGGCAACGCCGATACCGTCCAGGCCCAAGACGAAAAACAAGAAGAGCCTGGTCTCCTCGATTGGGAGCCCAACGGCGAAGAAGATGAGGGTTTCGTGGAACCGCCAGAAGAGGCCAAACTCTTCGTCGGCAACTTGCCTTACGACGTTGATAGTGAGAAATTGGCCATGCTATTCGACAAAGCCGGAATCGTTGAAATCGCCGAGGTGATTTATAACAGGGAAACTGACCGGAGTCGCGGATTTGGGTTTGTGACCATGAGTACTGTTGAAGAAGCTGAGAAAGCTGTGGAGAAATTCAGTGGCTATGATTATGATGGAAGACAGTTGACTGTTAATAAGGCTTCTCCGAGAGGAGCTCAACCTGAACGCCCACCTCGTCGTAACTTTGAGCCTGCTGCTTCTATCTATGTTGGTAATTTGCCATGGGATATTGATAGCACAAGGTTGGAGCAAGTTTTCAGTGAGCATGGTAAGGTTTTGAGTGCTAGGGTAGTCTATGACAGGGACAGTGGTCGTTCTCGTGGCTTTGGCTTTGTCACAATGTCGAATGAATCAGAAATGAATGATGCTGTTGCTGCTCTTGATGGTCAGACTTTGGACGGAAGAACAATTAGGGTGAATGTTGCTGAGGACAGACCCCCCAGGCGTAGCTCCTACTGA 906 0.5077 MSITATAFKSLTMADSCLLSSPSSLFHNITKSHVFSPPSKPLTLQFSCLNSSPSLSLSLAARTHRSPVLTYVAQTSDWAQQEGNADTVQAQDEKQEEPGLLDWEPNGEEDEGFVEPPEEAKLFVGNLPYDVDSEKLAMLFDKAGIVEIAEVIYNRETDRSRGFGFVTMSTVEEAEKAVEKFSGYDYDGRQLTVNKASPRGAQPERPPRRNFEPAASIYVGNLPWDIDSTRLEQVFSEHGKVLSARVVYDRDSGRSRGFGFVTMSNESEMNDAVAALDGQTLDGRTIRVNVAEDRPPRRSSY* 302
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phac9g02859 301 CDD RRM2_NsCP33_like 217 291 - -
Phac9g02859 301 SUPERFAMILY RNA-binding domain, RBD 205 299 IPR035979 GO:0003676
Phac9g02859 301 MobiDBLite consensus disorder prediction 80 113 - -
Phac9g02859 301 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 120 198 IPR000504 GO:0003723
Phac9g02859 301 FunFam 31 kDa ribonucleoprotein, chloroplastic 204 299 - -
Phac9g02859 301 PANTHER OS02G0815200 PROTEIN 25 298 - -
Phac9g02859 301 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 122 191 IPR000504 GO:0003723
Phac9g02859 301 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 217 287 IPR000504 GO:0003723
Phac9g02859 301 SUPERFAMILY RNA-binding domain, RBD 116 209 IPR035979 GO:0003676
Phac9g02859 301 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 215 293 IPR000504 GO:0003723
Phac9g02859 301 SMART rrm1_1 216 289 IPR000504 GO:0003723
Phac9g02859 301 SMART rrm1_1 121 194 IPR000504 GO:0003723
Phac9g02859 301 Gene3D - 70 202 IPR012677 -
Phac9g02859 301 Gene3D - 203 300 IPR012677 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phac9g02859 Phac-Chr9 27389617 27392299 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Phac9g02859 106 301 Eukaryotic Initiation Factors Gene Family AT3G16380 33.816 7.03e-25 102
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Phac9g02859 - - gmx:100810381 436.032