Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phac9g02849 ATGACAACCACTCTAGTCCCTTTGCTTTTCTTCCTCTTCTCACTCTTCACTCCTACCCTCATTTTCTCTTCACCATTTCATAACCCTGAAGAGGTTGTGCAAGAGGTCAACAGGAAAATCAACGCCTCCATGGCTAGGCATAGGAGGAGCTTGGGCTACCTCTCATGCGGCAGTGGCAACCCCATTGACGACTGTTGGCGGTGCGACCCGAATTGGGAGCAGAACCGGCAAAGGCTAGCGGACTGCGCAATCGGGTTCGGAAAGAACGCCATCGGCGGAAGGGACGGGAAGATCTACGTGGTGGACGACGCCGGTGACGACGACCCGGTGAACCCGAAGCCAGGGACGCTCCGCCACGCCGTGATCCAAGACGAGCCCCTCTGGATCATCTTCGCACGCGACATGGTGATCCAGCTGAAGGAGGAGCTTCTAATGAACTCCTTCAAGACCATCGATGGCCGCGGCGCCAGCGTGCACATCGCCGGCGGCCCCTGCATCACCGTGCAGTACGTGACGAATGTGATCATCCACGGAATCCACCTGCACGACTGCAAGCAGGGAGGGAACGCTATGGTGCGGTCCTCCCCACGGCACTACGGGTGGAGAACCGTGTCGGACGGCGACGGCGTGTCCATATTCGGAGGAAGCCACGTGTGGGTGGATCACTGCTCCTTGTCGAACTGCAATGATGGGTTGATCGACGCCATCCATGGGTCCACTGCCATCACCATCTCCAACAATTACATGACGCATCATGACAAGGTCATGCTCTTAGGTCACAGTGACTCTTACACTCAGGACAAGGACATGCAGGTCACTATTGCTTTCAACCACTTCGGTGAAGGCCTTGTTCAAAGGATGCCAAGGTGTAGGCTTGGGTATTTCCATGTGGTGAACAATGATTATACTCACTGGGAAATGTATGCCATTGGGGGAAGTGCTAATCCAACCATCAATAGCCAAGGCAACAGATTTGTTGCACCCGATGACAGATTCAGCAAAGAGGTGACAAAACGAGAAGATGCAGCAGAGAGTGAATGGCAGGGCTGGAATTGGAGATCAGAAGGGGACTTGTTAGTAAATGGTGCATTTTTCACTGCTTCCGGAGCTGGAGCCTCCTCTAGCTATGCAAGGGCTTCTAGCCTAAGTGCAAGACCATCTTCACTTGTTGCTTCCATTACAACAGGTGCTGGTGCACTATCCTGCAAGAAAGCTTCTCCTTGCTCATCATGA 1233 0.5369 MTTTLVPLLFFLFSLFTPTLIFSSPFHNPEEVVQEVNRKINASMARHRRSLGYLSCGSGNPIDDCWRCDPNWEQNRQRLADCAIGFGKNAIGGRDGKIYVVDDAGDDDPVNPKPGTLRHAVIQDEPLWIIFARDMVIQLKEELLMNSFKTIDGRGASVHIAGGPCITVQYVTNVIIHGIHLHDCKQGGNAMVRSSPRHYGWRTVSDGDGVSIFGGSHVWVDHCSLSNCNDGLIDAIHGSTAITISNNYMTHHDKVMLLGHSDSYTQDKDMQVTIAFNHFGEGLVQRMPRCRLGYFHVVNNDYTHWEMYAIGGSANPTINSQGNRFVAPDDRFSKEVTKREDAAESEWQGWNWRSEGDLLVNGAFFTASGAGASSSYARASSLSARPSSLVASITTGAGALSCKKASPCSS* 411
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phac9g02849 410 PANTHER PECTATE LYASE 18-RELATED 27 406 IPR045032 GO:0030570
Phac9g02849 410 Gene3D - 59 401 IPR012334 -
Phac9g02849 410 SMART amb_all 134 331 IPR002022 -
Phac9g02849 410 PRINTS Pollen allergen Amb family signature 142 158 IPR018082 -
Phac9g02849 410 PRINTS Pollen allergen Amb family signature 350 374 IPR018082 -
Phac9g02849 410 PRINTS Pollen allergen Amb family signature 286 305 IPR018082 -
Phac9g02849 410 PRINTS Pollen allergen Amb family signature 379 402 IPR018082 -
Phac9g02849 410 PRINTS Pollen allergen Amb family signature 106 131 IPR018082 -
Phac9g02849 410 PRINTS Pollen allergen Amb family signature 308 327 IPR018082 -
Phac9g02849 410 PRINTS Pollen allergen Amb family signature 82 99 IPR018082 -
Phac9g02849 410 PRINTS Pollen allergen Amb family signature 206 227 IPR018082 -
Phac9g02849 410 Pfam Pectate lyase 145 325 IPR002022 -
Phac9g02849 410 SUPERFAMILY Pectin lyase-like 49 402 IPR011050 -
Phac9g02849 410 FunFam Pectate lyase 59 401 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phac9g02849 Phac-Chr9 27265960 27268593 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Phac9g02849 8 408 Polysaccharide Lyase AT5G63180 79.901 0.0 657
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Phac9g02849 K01728 - gmx:100814679 750.74