Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phac9g02848 ATGATGATGGATGGGCGGCGGCATTCAGTTGATATTCCAATTTCCAAAACTCTTGTGGCACTGAGGAGAGTCAGGTCATTGAGGGATCCCTCGACTAATTCTATGAGCAAACTCTCTTCTCTGGTTGATAATGTGCACTGGGAAAACGGTTCTGCTAATGACATTTCCCTTCGGTTTTCTGATGCTGCACGGCCACGTGATTCTGATGATAATGCTGCTCTCAGATCAAGAATTTTAGGTTTCAAGGGACAATGGGAGCAGAATGATGCTGATTCTGTATTCAACTCAAGGATGAAGCCTAGTGGGATTTCTTGTCAGGGTGTCCAACAAGATGGTGAACTAGTTTACTCTAAGCGTAAAAGCGAAAGCTGTGGTAGCAACCATGGGGGTAAAGAATTGGACTTGGCTCGTATTTTGCTTCCAAGTAACAATGATTTCAAGGATGGGGATTCATGTTATATAGCAACTGCTAGATCATCTCAATTAGGGAGATTAGATTGCTCTAAGTCAGCAAAAAAGTCTCTGCGCAAGAATCAAGTAAAACCATCAGAGTTAGTAGGCAGTACTGATGATGGCAATGTTAGTCCATACCCTTCTGGTTATGATGCTTTCTCACCCTATAGTGGTTCAGTAGGTATAAATCAAGATATGGATGGTTTAGATAATAATGATAACGGGTGTGGAATAAGCTGCTGTTGGTCAAGATCACCAAGATTTAGAGAATCAAATCTATATGGTGAGATAGAAGACCGTCCTTTGATATCTCAGCGAGTTGATGAGTCAGATCTTCATGCACACAGAAGCATGAGACACAATGGTGGTGGGATTAGTCTGAATTTGGAAACTCCTAGGAGTTTGTCCATGAAATTCAGGCCTAAATCATTTAGTGATTTGGTGGGACAAAATGTGGTAGTGAGGTCTTTGTTGGGGGCTATCTCCAGAGGAAGAATAACATCGTTTTATCTCTTCTATGGTCCGCGTGGCACCGGCAAGACATCTGCATCTAGGATATTTGCTGCTGCACTGAATTGCCTTTCTTTTGAGGAGCAGAGGCCATGTGGCCTATGCAGAGAATGTATTATATTCTTTTCTGGAAGAAGTAAAGATGTTAAGGAAGTGGATTCTGTGAGAATCAATCGCACCGACCAGGTTAAATCCCTTGTTAAGAGTTCAAGCATCCCTCCAGTCTCCTCACGTTTCAAGGTTTTCATTGTTGATGAGTGCCAGCTATTGAACGGGGAGACATGGGCAAGCATTTCAAATAGCCTAGAGAACCTTTCTCAACATGTTGTTTTTGTGATGATCACTCCTGATTTGGATAAGCTTCCACGGACTGTGGTTTCCCGTGCCCAGAGGTATCACTTTCCAAAGGTTAAAGACGCTGACATTGTATGCAGATTACAAAATATTTGCGCCGAAGAAAGTCTTGATTTTGAACAGGAAGCTTTGGACTTTATTGCTGCAAAATCCTGTGGGTCTGTTAGGGATGCAGAAATGATGCTTGATCAGATGAGTTTGCTTGGTAAAAAGATCAATATCTCTTTAGCTTATGAACTTACTGGGATCGTTTCTGATGATGAATTACTTGATTTGCTGGATCTAGCTTTTTCATCCGACACTTCAAATACAGTCATTAGAGCTCGGGAGCTGATGAGATCAAGGATAGATCCTTTGCAACTTGTATCACAACTAGCAAATCTCATTATGGACATACTTGCAGGGAAATGCGAAAATAGTGGTTCAGAAGTCAGAAGTAGATTTTACAGGAAATATACCTCGGAAGCTGATCTGCAGAAACTAAACAATGCATTGAAAATACTTTCTGAAACTGAGAAGCAGTTGAGAATTTCCAAGAATCAAACAACATGGTTCACCGTAGCTCTCCTACAGTTAAGCTCTGTAGATTATCAATCTGTGGATGCAAATGACACCAAATTTAGTCTTAGAGGTCAAAACTTGGAGCATTTTGAAACAGGCCTGTGTGCTAACAAGTCATACAGATTAGAAGTGCCGGAGGATCACAAAGGAACATTGGATTCCATTTGGTATAAAGCCACTCAGATGTGTCATTCTAGTCAGCTCAAAACTTTTCTCAGGAAGAAGGGGAAGTTGTCGTCACTTCATGTTGATCGCAGTACAGCTTGTCTTGCTATTGCCGAGTTGGAGTTCCACCATAGCCACCATGTATCCAAGGCCGAGAAGTCATGGAAAATGATTGCAAGCTCCTTGCAATTCATATTGGGTTGCAATGTGGAGTTGAGGATCACTTATACACCTTGTGCTTCAGATTCTAAGTATTCCAAATTGAAGAGATCAACTTTCAGTATCTTCACTTGTTCCCGCAAAAATCGGCAACAGAAGTCAGCATCATCTAATGAACAAGGAAGTGAATCAGATTGTGCTGATTGCACCTCTGAAAATCCCATGATGAAGGACAAAACTTCTACCTCTGATTGTGGAATGGATTCTGTAACAGCTTTGAGGAGTTGTGAAGGGAACTTGCTGAGCTCAGGAGAAAGATTTTTTAATAGATCATTTCAAGAGAGTATGAGAACATCATGTGCTGAAGTGGATTCTTCCAAGGAAAAGGGATGCAACGGTGCTCATCTAGATCCATCAATCCTCGATTCAGATAATGAACACTTTAACTGTTTTCCTAAAACCCTTTGGCTTCCAAAGAAGTTCCGTTCTTCATATTCATCCAAGTTTACTTTTCAAGGCATTCAACAACAGAAAGATTTTGTTTTATCTGTCCCGAAGTGTACATGTTCTGGGACATATACATATGCTATTGAACCCTGCATTTTTTCCGGTAGTTGTAAGAATTGCACCAAAGCCTCTTAG 2844 0.411 MMMDGRRHSVDIPISKTLVALRRVRSLRDPSTNSMSKLSSLVDNVHWENGSANDISLRFSDAARPRDSDDNAALRSRILGFKGQWEQNDADSVFNSRMKPSGISCQGVQQDGELVYSKRKSESCGSNHGGKELDLARILLPSNNDFKDGDSCYIATARSSQLGRLDCSKSAKKSLRKNQVKPSELVGSTDDGNVSPYPSGYDAFSPYSGSVGINQDMDGLDNNDNGCGISCCWSRSPRFRESNLYGEIEDRPLISQRVDESDLHAHRSMRHNGGGISLNLETPRSLSMKFRPKSFSDLVGQNVVVRSLLGAISRGRITSFYLFYGPRGTGKTSASRIFAAALNCLSFEEQRPCGLCRECIIFFSGRSKDVKEVDSVRINRTDQVKSLVKSSSIPPVSSRFKVFIVDECQLLNGETWASISNSLENLSQHVVFVMITPDLDKLPRTVVSRAQRYHFPKVKDADIVCRLQNICAEESLDFEQEALDFIAAKSCGSVRDAEMMLDQMSLLGKKINISLAYELTGIVSDDELLDLLDLAFSSDTSNTVIRARELMRSRIDPLQLVSQLANLIMDILAGKCENSGSEVRSRFYRKYTSEADLQKLNNALKILSETEKQLRISKNQTTWFTVALLQLSSVDYQSVDANDTKFSLRGQNLEHFETGLCANKSYRLEVPEDHKGTLDSIWYKATQMCHSSQLKTFLRKKGKLSSLHVDRSTACLAIAELEFHHSHHVSKAEKSWKMIASSLQFILGCNVELRITYTPCASDSKYSKLKRSTFSIFTCSRKNRQQKSASSNEQGSESDCADCTSENPMMKDKTSTSDCGMDSVTALRSCEGNLLSSGERFFNRSFQESMRTSCAEVDSSKEKGCNGAHLDPSILDSDNEHFNCFPKTLWLPKKFRSSYSSKFTFQGIQQQKDFVLSVPKCTCSGTYTYAIEPCIFSGSCKNCTKAS* 948
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phac9g02848 947 CDD HLD_clamp_pol_III_gamma_tau 458 521 IPR045085 -
Phac9g02848 947 FunFam Protein STICHEL-like 1 isoform C 522 635 - -
Phac9g02848 947 Coils Coil 597 620 - -
Phac9g02848 947 NCBIfam DNA polymerase III subunit gamma/tau 285 631 IPR012763 GO:0003887|GO:0005524|GO:0006260|GO:0009360
Phac9g02848 947 PANTHER REPLICATION FACTOR C / DNA POLYMERASE III GAMMA-TAU SUBUNIT 286 695 - -
Phac9g02848 947 SMART AAA_5 317 460 IPR003593 GO:0016887
Phac9g02848 947 SUPERFAMILY post-AAA+ oligomerization domain-like 522 632 IPR008921 GO:0003677|GO:0006260
Phac9g02848 947 Gene3D - 459 521 - -
Phac9g02848 947 FunFam DNA polymerase III subunit gamma/tau 459 521 - -
Phac9g02848 947 Gene3D - 522 635 - -
Phac9g02848 947 Pfam DNA polymerase III, delta subunit 301 458 - -
Phac9g02848 947 Gene3D - 279 456 IPR027417 -
Phac9g02848 947 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 287 507 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phac9g02848 Phac-Chr9 27226993 27231254 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Phac9g02848 289 614 Core DNA Replication Machinery Family AT1G21690 25.758 1.91e-13 70.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Phac9g02848 - - gmx:100812040 1536.55