Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phac9g02837 ATGGAGCCCTCTGAATCCGAATCAGTTAGTTCCCCCACCAAGGACCCGCAATTGGGTGAACCTTTCACCCCTGTTCACCCACTCGATCATGATCCTCAACCCTCAGATCTCAATCACGTTGCCCAAGATGATGCTGCACTTGGTGGGGAGCTTGAGGACAAGTTGGATTTGAAGGATGAGGGTGAGAGTGAGGATAAAGGTTCGAACTTGGAAGATGGGGGTGGAAATTTGAGTGATGAAGGTGCTGCCCCTGAAGGTGGTAAGGGAGAAGGGAGTGAGGATGATGGTGGTGGTGATGTTGTTGTTGTTGTTGATGATGACGATGATGATTGCAATGGGGGTGACGAGGGGTGTGATTGGATTGAGAATGTGAATGAGAGTGAAAGTGATAAGGTGAGTGGAGATGTGGAGGGAGTGGAGTGTAGGGATGAAAGGAGCAGTGGGAGAGCTCAACAGTACCCCTTGAGGCCTGAGGCTGAAGACTGTGCGTTTTATCTCAAAACTGGAACTTGCAAATTTGGATTCAATTGCAAATTCAATCATCCGCTTAAGAGGAAAAACCAGGCTAAAAAAGAGAATGCGGGAGAAAAAGAAGAACAGGCAGAAAGATCAGGGCAGACGGAATGCAAGTATTATTTAAGATCTGGGGGGTGTAAGTTTGGAAAGGCTTGTAAGTTTAATCACACAAGGGGAATGTCTTCAACATCCTCAATTGTAGAGCTTAACTTCCTTGGCCTGCCTATTCGAGTGGGAGAGAAAGAGTGTCACTATTACATGCGTACTGGCTCTTGTAAGTTTGGAGCAAACTGCAAGTTTAATCATCCCGATCCTACGGCTGGAGGAGGTGATTCTCCTTCTGGATATGCTAATCCAGTGGTTTCTCCTCAAAGTTCTGAATGGGATGGATATCAGGCACCTGTCTATCTACCTGAGAGGAATATGCATCTACCTTCAACATATGTCATGAACAACCCAGCTATGGAAACAAATGTTTATATGCACCATCAAAAACAAATGCAGGTTGAAGAGTTTCCAGAAAGGCCTGGTGAACCTGAATGCAGCTATTTCTTAAAAACAGGGGATTGCAAGTTTAAATCTAATTGTAAGTTTCACCATCCAAAGAATCGGATTGCAAGATTACCTCCATGCAGTCTTAGTGACAAGGGTCTACCTTTGAGACCGGACCAGAATGTTTGCACATATTACAGCCGTTATGGAATTTGCAAATTCGGACCAGCTTGTAAGTTCGACCACCCACCACCCTCAACTATAAGTGGACTTGATCAACAATCCTCTTACACAAATTCTGCAAGTGTTGATGTGGCTGAAAATGGAGGTGTCAGTGATGGGAACCAACTGTCTCTATAA 1368 0.4496 MEPSESESVSSPTKDPQLGEPFTPVHPLDHDPQPSDLNHVAQDDAALGGELEDKLDLKDEGESEDKGSNLEDGGGNLSDEGAAPEGGKGEGSEDDGGGDVVVVVDDDDDDCNGGDEGCDWIENVNESESDKVSGDVEGVECRDERSSGRAQQYPLRPEAEDCAFYLKTGTCKFGFNCKFNHPLKRKNQAKKENAGEKEEQAERSGQTECKYYLRSGGCKFGKACKFNHTRGMSSTSSIVELNFLGLPIRVGEKECHYYMRTGSCKFGANCKFNHPDPTAGGGDSPSGYANPVVSPQSSEWDGYQAPVYLPERNMHLPSTYVMNNPAMETNVYMHHQKQMQVEEFPERPGEPECSYFLKTGDCKFKSNCKFHHPKNRIARLPPCSLSDKGLPLRPDQNVCTYYSRYGICKFGPACKFDHPPPSTISGLDQQSSYTNSASVDVAENGGVSDGNQLSL* 456
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phac9g02837 455 MobiDBLite consensus disorder prediction 1 17 - -
Phac9g02837 455 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 396 420 IPR000571 GO:0046872
Phac9g02837 455 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 252 275 IPR000571 GO:0046872
Phac9g02837 455 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 206 228 IPR000571 GO:0046872
Phac9g02837 455 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 349 374 IPR000571 GO:0046872
Phac9g02837 455 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 160 182 IPR000571 GO:0046872
Phac9g02837 455 PANTHER PROTEIN PHOSPHATASE RELATED 30 430 - -
Phac9g02837 455 SUPERFAMILY CCCH zinc finger 391 418 IPR036855 GO:0046872
Phac9g02837 455 ProSiteProfiles Zinc finger C3H1-type profile. 203 231 IPR000571 GO:0046872
Phac9g02837 455 MobiDBLite consensus disorder prediction 99 116 - -
Phac9g02837 455 MobiDBLite consensus disorder prediction 46 69 - -
Phac9g02837 455 SUPERFAMILY CCCH zinc finger 206 230 IPR036855 GO:0046872
Phac9g02837 455 Gene3D - 193 279 - -
Phac9g02837 455 Gene3D - 132 192 - -
Phac9g02837 455 Gene3D - 303 382 - -
Phac9g02837 455 SMART c3hfinal6 156 183 IPR000571 GO:0046872
Phac9g02837 455 SMART c3hfinal6 203 230 IPR000571 GO:0046872
Phac9g02837 455 SMART c3hfinal6 393 420 IPR000571 GO:0046872
Phac9g02837 455 SMART c3hfinal6 251 276 IPR000571 GO:0046872
Phac9g02837 455 SMART c3hfinal6 347 374 IPR000571 GO:0046872
Phac9g02837 455 Gene3D - 393 443 - -
Phac9g02837 455 ProSiteProfiles Zinc finger C3H1-type profile. 393 421 IPR000571 GO:0046872
Phac9g02837 455 ProSiteProfiles Zinc finger C3H1-type profile. 347 375 IPR000571 GO:0046872
Phac9g02837 455 ProSiteProfiles Zinc finger C3H1-type profile. 249 277 IPR000571 GO:0046872
Phac9g02837 455 MobiDBLite consensus disorder prediction 1 121 - -
Phac9g02837 455 SUPERFAMILY CCCH zinc finger 250 276 IPR036855 GO:0046872
Phac9g02837 455 ProSiteProfiles Zinc finger C3H1-type profile. 156 184 IPR000571 GO:0046872
Phac9g02837 455 SUPERFAMILY CCCH zinc finger 352 376 IPR036855 GO:0046872
Phac9g02837 455 SUPERFAMILY CCCH zinc finger 155 184 IPR036855 GO:0046872
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phac9g02837 Phac-Chr9 27133226 27138026 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Phac9g02837 343 442 C2H2 Transcription Factor Family AT3G02830 46.602 5.31e-22 95.5
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Phac9g02837 zf-CCCH 6.4e-09 CL0537
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Phac9g02837 - - gmx:100809906 629.402
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phac9g02837 9 27133226 27138026 Phac9g02837 9 27133226 27138026 ECH