Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phac9g02836 ATGGAGCCCTCTGAATCCGAATCAGTTAGTTCCCCCACCAAGGACCCGCAATTGGGTGAACCTTTCACCCCTGTTCACCCACTCGATCATGATCCTCAACCCTCAGATCTCAATCACGTTGCCCAAGATGATGCTGCACTTGGTGGGGAGCTTGAGGACAAGTTGGATTTGAAGGATGAGGGTGAGAGTGAGGATAAAGGTTCGAACTTGGAAGATGGGGGTGGAAATTTGAGTGATGAAGGTGCTGCCCCTGAAGGTGGTAAGGGAGAAGGGAGTGAGGATGATGGTGGTGGTGATGTTGTTGTTGTTGTTGATGATGACGATGATGATTGCAATGGGGGTGACGAGGGGTGTGATTGGATTGAGAATGTGAATGAGAGTGAAAGTGATAAGGTGAGTGGAGATGTGGAGGGAGTGGAGTGTAGGGATGAAAGGAGCAGTGGGAGAGCTCAACAGTACCCCTTGAGGCCTGAGGCTGAAGACTGTGCGTTTTATCTCAAAACTGGAACTTGCAAATTTGGATTCAATTGCAAATTCAATCATCCGCTTAAGAGGAAAAACCAGGCTAAAAAAGAGAATGCGGGAGAAAAAGAAGAACAGGCAGAAAGATCAGGGCAGACGGAATGCAAGTATTATTTAAGATCTGGGGGGTGTAAGTTTGGAAAGGCTTGTAAGTTTAATCACACAAGGGGAATGTCTTCAACATCCTCAATTGTAGAGCTTAACTTCCTTGGCCTGCCTATTCGAGTGGGAGAGAAAGAGTGTCACTATTACATGCGTACTGGCTCTTGTAAGTTTGGAGCAAACTGCAAGTTTAATCATCCCGATCCTACGGCTGGAGGAGGTGATTCTCCTTCTGGATATGGTAATGGAAGTTCTATTTCATTACAAGGTGTGTCGCAATCATCTATATCCTCATGGTCTTCTTTTAGACCATTAAATGAATCCACTCCTTTTGTGCCGGTGATACTTTCAGCTAATCCAGTGGTTTCTCCTCAAAGTTCTGAATGGGATGGATATCAGGCACCTGTCTATCTACCTGAGAGGAATATGCATCTACCTTCAACATATGTCATGAACAACCCAGCTATGGAAACAAATGTTTATATGCACCATCAAAAACAAATGCAGGTTGAAGAGTTTCCAGAAAGGCCTGGTGAACCTGAATGCAGCTATTTCTTAAAAACAGGGGATTGCAAGTTTAAATCTAATTGTAAGTTTCACCATCCAAAGAATCGGATTGCAAGATTACCTCCATGCAGTCTTAGTGACAAGGGTCTACCTTTGAGACCGGACCAGAATGTTTGCACATATTACAGCCGTTATGGAATTTGCAAATTCGGACCAGCTTGTAAGTTCGACCACCCACCACCCTCAACTATAAGTGGACTTGATCAACAATCCTCTTACACAAATTCTGCAAGTGTTGATGTGGCTGAAAATGGAGGTGTCAGTGATGGGAACCAACTGTCTCTATAA 1479 0.4442 MEPSESESVSSPTKDPQLGEPFTPVHPLDHDPQPSDLNHVAQDDAALGGELEDKLDLKDEGESEDKGSNLEDGGGNLSDEGAAPEGGKGEGSEDDGGGDVVVVVDDDDDDCNGGDEGCDWIENVNESESDKVSGDVEGVECRDERSSGRAQQYPLRPEAEDCAFYLKTGTCKFGFNCKFNHPLKRKNQAKKENAGEKEEQAERSGQTECKYYLRSGGCKFGKACKFNHTRGMSSTSSIVELNFLGLPIRVGEKECHYYMRTGSCKFGANCKFNHPDPTAGGGDSPSGYGNGSSISLQGVSQSSISSWSSFRPLNESTPFVPVILSANPVVSPQSSEWDGYQAPVYLPERNMHLPSTYVMNNPAMETNVYMHHQKQMQVEEFPERPGEPECSYFLKTGDCKFKSNCKFHHPKNRIARLPPCSLSDKGLPLRPDQNVCTYYSRYGICKFGPACKFDHPPPSTISGLDQQSSYTNSASVDVAENGGVSDGNQLSL* 493
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phac9g02836 492 ProSiteProfiles Zinc finger C3H1-type profile. 384 412 IPR000571 GO:0046872
Phac9g02836 492 SUPERFAMILY CCCH zinc finger 428 455 IPR036855 GO:0046872
Phac9g02836 492 SUPERFAMILY CCCH zinc finger 155 184 IPR036855 GO:0046872
Phac9g02836 492 MobiDBLite consensus disorder prediction 1 17 - -
Phac9g02836 492 Gene3D - 340 419 - -
Phac9g02836 492 Gene3D - 136 192 - -
Phac9g02836 492 SUPERFAMILY CCCH zinc finger 389 413 IPR036855 GO:0046872
Phac9g02836 492 SUPERFAMILY CCCH zinc finger 206 230 IPR036855 GO:0046872
Phac9g02836 492 ProSiteProfiles Zinc finger C3H1-type profile. 203 231 IPR000571 GO:0046872
Phac9g02836 492 SUPERFAMILY CCCH zinc finger 250 276 IPR036855 GO:0046872
Phac9g02836 492 MobiDBLite consensus disorder prediction 99 116 - -
Phac9g02836 492 ProSiteProfiles Zinc finger C3H1-type profile. 430 458 IPR000571 GO:0046872
Phac9g02836 492 MobiDBLite consensus disorder prediction 46 69 - -
Phac9g02836 492 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 206 228 IPR000571 GO:0046872
Phac9g02836 492 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 252 275 IPR000571 GO:0046872
Phac9g02836 492 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 433 457 IPR000571 GO:0046872
Phac9g02836 492 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 386 411 IPR000571 GO:0046872
Phac9g02836 492 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 160 182 IPR000571 GO:0046872
Phac9g02836 492 Gene3D - 193 279 - -
Phac9g02836 492 Gene3D - 428 480 - -
Phac9g02836 492 SMART c3hfinal6 156 183 IPR000571 GO:0046872
Phac9g02836 492 SMART c3hfinal6 203 230 IPR000571 GO:0046872
Phac9g02836 492 SMART c3hfinal6 384 411 IPR000571 GO:0046872
Phac9g02836 492 SMART c3hfinal6 251 276 IPR000571 GO:0046872
Phac9g02836 492 SMART c3hfinal6 430 457 IPR000571 GO:0046872
Phac9g02836 492 PANTHER PROTEIN PHOSPHATASE RELATED 30 467 - -
Phac9g02836 492 ProSiteProfiles Zinc finger C3H1-type profile. 249 277 IPR000571 GO:0046872
Phac9g02836 492 MobiDBLite consensus disorder prediction 1 121 - -
Phac9g02836 492 ProSiteProfiles Zinc finger C3H1-type profile. 156 184 IPR000571 GO:0046872
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phac9g02836 Phac-Chr9 27133226 27138026 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Phac9g02836 380 479 C2H2 Transcription Factor Family AT3G02830 46.602 5.73e-22 95.9
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Phac9g02836 zf-CCCH 7e-09 CL0537
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Phac9g02836 - - gmx:100809906 679.093