Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phac9g02833 ATGGGTGGCGAGGAACAAGGAGTTTCTGTTTGTGCTGCCTGCATCAACAACTGTCTATTGTTCCACCCAACCAAACCAACTTCACCTACCTCTTTCTTCAAGTTCATCACTAGACAAGATTATTTAACAACTTTGTGTATTCCTCCTGCTTTTAGTAGTATTGTGGCCAACATGGTTAACAAGAAAATCAATCTCAATGATTCAAGTGGGCAGCAGTGGAAGGTTAAAGTATCAGAAGTTAATGGTTCTTTTGTTTTTGGGGAGGGATGGAGTAGTTTCTCATTGGGTCTTGGGCTTAAAGTTGGATATCTCTTGGTATTCAATTACGTTAAGGATTTGCACTTTGATGTCAAGATCTATGATACTTCTGCCTGTGAAAAGCTAGGCTTTTCTAAAAAAAGAGGTCAGAAGAAAAGAAGTAGGGGCAAAATTGTCTCACCAGTTAGAGATGGTATCTTGGTCAGACAAGAACCCAATGCGCCAAAAATGAAAAGGCAGTGCAGCGAGGTTGACTTAGATTTACCACAAAACTCTAAAGAGAGTGGCCAACTTATGCACATATCAGATCACTGTGAAGACCCATGTTATTCAAAAAGCCTAGAATTTGACCAGAGCCATGGTGATGATGGGACCATGAAAATTGAGAACGGAGATTTAAAAGTTTCTAATGTTGATTATGAATCCAATATATTTGAAAAGGATGCAATGACATGCAGTAAAGATACTATGTTTGAAGGGATATTCAGTACGGAAGTTGCCTTGGATATATCTGAACTCGAAAAATCTGGAAGAAGTGCTTCTCTAGGTGAGGCAGAGACAAGTACATATGGCAAGACTTCTAATTTGAAAATTGAAGAGAACAAAGCCATCTTGTCCAACATGGAAGCTCAAGAGTGCCAATTTTCCAAGGGCTTAGTTATTATGATTACTGGTGAAATGAAGAAATTGCCTGAGGACATGACTCCCAACTTGGACAGTTCCATGGATGAATTGAATTTAACAGGTGAAGTGTCTAAACAGTTGAAGAAAGAGCTTGTAACTCTCATTGAATTGGAAGCAACAGGGTTGCCCACGGAAATTAAGGGACTGTTGGACTCTGACATATTTAATGAAGATAATGCGAGACACTCTAAAACTACACACCTCTCCTGTGTGGTTCCTCATGATAATGTTTGCCTTAAACTGCCCAAATGCCTGCCTATGATTCGCAAGGTAAAAGTAGATCAGCAAAGGAAGATGGTAGTATTTCTTCGGGATCCACTGAGGAGATTGTGGCCGGTCTTTTACCATGAAAAACCGCATTTACAATTACTGGCACATGGATGGTTAGATTTTTGCAGAGCTAATAACATTCAAGCGAAAGATGAGTGTATTTTTGAGGCTGAGGTTGATCCTGAGTGCAAGTCTAAACATATCTTATCAGTTCATATAGTCCATAACAAGTGA 1446 0.3949 MGGEEQGVSVCAACINNCLLFHPTKPTSPTSFFKFITRQDYLTTLCIPPAFSSIVANMVNKKINLNDSSGQQWKVKVSEVNGSFVFGEGWSSFSLGLGLKVGYLLVFNYVKDLHFDVKIYDTSACEKLGFSKKRGQKKRSRGKIVSPVRDGILVRQEPNAPKMKRQCSEVDLDLPQNSKESGQLMHISDHCEDPCYSKSLEFDQSHGDDGTMKIENGDLKVSNVDYESNIFEKDAMTCSKDTMFEGIFSTEVALDISELEKSGRSASLGEAETSTYGKTSNLKIEENKAILSNMEAQECQFSKGLVIMITGEMKKLPEDMTPNLDSSMDELNLTGEVSKQLKKELVTLIELEATGLPTEIKGLLDSDIFNEDNARHSKTTHLSCVVPHDNVCLKLPKCLPMIRKVKVDQQRKMVVFLRDPLRRLWPVFYHEKPHLQLLAHGWLDFCRANNIQAKDECIFEAEVDPECKSKHILSVHIVHNK* 482
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phac9g02833 481 SUPERFAMILY DNA-binding pseudobarrel domain 406 476 IPR015300 -
Phac9g02833 481 CDD B3_DNA 408 460 IPR003340 GO:0003677
Phac9g02833 481 Gene3D - 365 481 IPR015300 -
Phac9g02833 481 ProSiteProfiles B3 DNA-binding domain profile. 415 481 IPR003340 GO:0003677
Phac9g02833 481 SUPERFAMILY DNA-binding pseudobarrel domain 28 125 IPR015300 -
Phac9g02833 481 ProSiteProfiles B3 DNA-binding domain profile. 30 123 IPR003340 GO:0003677
Phac9g02833 481 PANTHER B3 DOMAIN-CONTAINING 28 461 - -
Phac9g02833 481 SMART B3_2 32 123 IPR003340 GO:0003677
Phac9g02833 481 CDD B3_DNA 31 121 IPR003340 GO:0003677
Phac9g02833 481 Gene3D - 25 125 IPR015300 -
Phac9g02833 481 Pfam B3 DNA binding domain 32 121 IPR003340 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phac9g02833 Phac-Chr9 27032439 27036623 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Phac9g02833 26 126 B3 DNA Binding Superfamily AT4G01580 31.429 3.87e-11 60.5
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Phac9g02833 B3 8.7e-12 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Phac9g02833 - - vra:106761496 740.725