Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phac9g02788 ATGAGGAAGAAGTTTGTGGCTGGGCCATTTGAGATAGAACCTATTAGGGTGACCCATTCTATTCCTGATTGTTGTGGACTAGTTCTTCGCTGTTCTGATGGTACTATTCTTCACACTGGGGACTGGAAGATTGATGAGACACCACTAGATGGGAATGTTTTTGATCGTGAAGCTTTAGAGGAACTCTCTAAAGAGGGAGTAACATTGATGATGAGTGATTCAACAAATGTACTCTCACCTGGTAGGACAATCAGTGAATCAGTAGTGGCAGATGCATTGTTGAGACATATTTCAGCTTCTAATGGAAGGGTCATTACCACCCAATTTGCATCAAATTTACATCGGCTCGGAAGTGTGAAAGCTGCTGCTGATTTAACTGGCAGAAAGTTGGTATTTGTTGGCATGTCCTTAAGGACATATTTAGATGCAGCTTGGAAGGATGGAAAGGCACCAATTGATCCATCCACTCTGGTGAAAGCAGAGGATATTGATGCTTATGCTCCAAAGGATCTGCTAATTGTAACAACAGGTTCTCAAGCAGAACCTCGTGCTGCCTTGAACCTTGCATCATTTGGAAGTAGTCATGCTTTCAAACTAACCAAGGAAGATCTTGTTTTGTATTCCGCTAAGGTTATCCCTGGTAACGAATCTCGTGTGATGAAAATGCTAAACCGTGTATCAGAGATTGGATCAACTATAGTTATGGGAAAAAATGAAGGTCTGCACACATCTGGTCATGCATATCGTGGAGAATTGGAAGAAGTACTTAGAATAGTGAAGCCACAACATTTTCTTCCCATCCATGGAGAACTTTTGTTTCTGAAGGAACATGAATTACTAGGAAAATCAACTGGCATTCGGCACACTGCTGTCATTAAGAATGGAGAGATGCTTGGTGTTACACATTTGAGAAATAGAAAAGTCCTTTCTAATGGTTTCATTTCCCTAGGAAAAGAGAATTTACAGTTGAAATATAGTGATGGAGATAGAGCATTTGGTACATCAAGTGAACTCTTCATTGATGAAAGAATGAGAATTGCTTTAGATGGCATCATTGTTACTAGCATGGAAATATTTCGCCCTAAAATTTTAGGTAGTTTGGCTCCGAATACCTTAAAAGGGAAAATAAGGATTACCACAAGATGCTTATGGCTCGACAAAGGGAAGCTGATGGATGCACTCTACAAATCTGCCCATGCCGCTCTTTCAAGCTGCCCTGTAAATAGTCCCCTGGCTCACATAGAAAGAACTGTGTCTGAGGTATTGAGAAAGATGGTGAGGAAGTATAGTGGTAAACGACCTGAAGTTATTTCCATTGCCATAGAAAATCCTGCATCCGCTATAGCTGATGAGATAAACACAAAATTGTCTGGCAAAACCCATGCGGGTCTTGGAATATCAACATCAAAAAGAGCAGTGGATAGACATGAGAGAGGAAATCAGCCCACCTCACTGCAAGTTACAGATGATAGTATTGATAATGTAAGTGGAGCCGAGGGTTATTTATCTGAGGAAGACAACACTGCAAGTGGAGCTGATGGTGATATATCCGAGTCAGAGGATTCAGATGAATTTTGGAAACCATTCATTACACCATTACCGGTTGAGAAGCCATTTGGTGCTGACAATGCTTATGATTCACAAAAGGAGCATGAGTCCAATCAAAAGAAAGGTGATTCTAAGAACACTGATGAAACCAAGTCTGAAGAAACGTCTACCTCTGAACCCAAGTCTTCAAAATCAGTAAAGAGAAATAAATGGAAAACTGATGAAGTTAAGAAGCTGATTGGCATGCGTGAGGAGCTACGTGACAGATTTGAAATTGTGAAGGGTAGGATGGCCCTCTGGGAAGAGATATCTCAAAAACTGTCGGCTGATGGGATCAGCAGAAGTCCTGGACAGTGCAAATCTTTGTGGACATCTTTGGTAATTAAATATGAGGGGATCAAGAATGAGAAGGATAGCAAGAAAAGTTGGCCATATATAGAGGACATGGAAAGGATAATGTCTGATAAAGAAGCTCCTGCAACAAAATGA 2037 0.408 MRKKFVAGPFEIEPIRVTHSIPDCCGLVLRCSDGTILHTGDWKIDETPLDGNVFDREALEELSKEGVTLMMSDSTNVLSPGRTISESVVADALLRHISASNGRVITTQFASNLHRLGSVKAAADLTGRKLVFVGMSLRTYLDAAWKDGKAPIDPSTLVKAEDIDAYAPKDLLIVTTGSQAEPRAALNLASFGSSHAFKLTKEDLVLYSAKVIPGNESRVMKMLNRVSEIGSTIVMGKNEGLHTSGHAYRGELEEVLRIVKPQHFLPIHGELLFLKEHELLGKSTGIRHTAVIKNGEMLGVTHLRNRKVLSNGFISLGKENLQLKYSDGDRAFGTSSELFIDERMRIALDGIIVTSMEIFRPKILGSLAPNTLKGKIRITTRCLWLDKGKLMDALYKSAHAALSSCPVNSPLAHIERTVSEVLRKMVRKYSGKRPEVISIAIENPASAIADEINTKLSGKTHAGLGISTSKRAVDRHERGNQPTSLQVTDDSIDNVSGAEGYLSEEDNTASGADGDISESEDSDEFWKPFITPLPVEKPFGADNAYDSQKEHESNQKKGDSKNTDETKSEETSTSEPKSSKSVKRNKWKTDEVKKLIGMREELRDRFEIVKGRMALWEEISQKLSADGISRSPGQCKSLWTSLVIKYEGIKNEKDSKKSWPYIEDMERIMSDKEAPATK* 679
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phac9g02788 678 Pfam Myb/SANT-like DNA-binding domain 584 668 IPR044822 -
Phac9g02788 678 Gene3D - 85 235 IPR042173 -
Phac9g02788 678 MobiDBLite consensus disorder prediction 543 586 - -
Phac9g02788 678 MobiDBLite consensus disorder prediction 459 586 - -
Phac9g02788 678 Gene3D - 3 300 IPR036866 -
Phac9g02788 678 MobiDBLite consensus disorder prediction 479 493 - -
Phac9g02788 678 SUPERFAMILY Metallo-hydrolase/oxidoreductase 5 298 IPR036866 -
Phac9g02788 678 ProSiteProfiles Myb-like domain profile. 579 643 IPR001005 -
Phac9g02788 678 CDD GT1 585 650 - -
Phac9g02788 678 PANTHER RIBONUCLEASE J 1 678 - -
Phac9g02788 678 Gene3D - 587 647 - -
Phac9g02788 678 Pfam Zn-dependent metallo-hydrolase RNA specificity domain 241 278 IPR011108 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phac9g02788 Phac-Chr9 26719319 26729213 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Phac9g02788 586 672 Trihelix Transcription Factor Family AT2G38250 34.831 8.09e-11 61.6
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Trihelix Phac9g02788 Myb_DNA-bind_4 2.2e-16 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Phac9g02788 - - gmx:100783850 1169.07