LGRPv2

Gene search

Sequence information

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Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Phac9g02692	ATGATGTCCAGAATGAACAGCGTTGGTTGGATGGAGGAACGTGAAGACGAGAACAACTCCGCTTCTTGGGCCAGGAACAAGCCCAACGCCACCATCATAGCCACCGACACAACAACCACATCAAAACCAACAACCACAGCAGCAGCAGGTTTCGTGGAAAACAACAGTACCCGCGACGACTTAGCATCTCTCTGCGCCTTCAAACCCATGCTGGAACTGGACGACGAATGGTACATCAGCAGCCACCACCAGCATAACAACCACCACCCCCAAGACATGACCTTCTCCCCCACCTTCCCCGACTCCGACAACCTCCTCCTCCCCGCCGTAGACTCCTCCTCCTCCTCCTCCGTCTTCACAAACCTCGACCCTTCCTCCTCCCACCTCCACTACTTCCTCCCTCCCAAGCCTCCCACTCTCTCTTCCCTTCTCAACCCCTTCGATATCCCCTTTCTTGACCCTCAAGCTTCCTCATCCTTCCCGCTTCTTCCATCTGCCCATTTCCCCTCCGACACGCCTCCTCAGACCGCCACCGCCACCGCCTTCGCCGGCTTCCACAGCCTTGACGACGGCTCCTCCAAGCCTCTCTTTCACCAGCGCTCGAAGATTCTGCGGCCCCTGGAGTCCCTGACTCCCTCCGGGGCGCCACCCACGCTCTTTCAGAAGAGGGCGGCGCTGAGGAAGAACATGTCTGGTGGGGAAGGGAGTGAGAAGAAGAGAAAGGAGAGGGAGGAGGTGGTGGAGGATGTGAGTTTTGATGGGTCTGGGTTGAATTATGATTCCGATGATTTTACTGAGATTAATAACAATGGTGGTAAAGTGGATGAGGGTAGTGCTAAGAAGGGTGGGAACAGTTCCAATGCCAACAGCAGCGTGACTGGGTTGGATCAGAAAGGGAAGAGGAAGGGAATGCCTGCTAAGAATTTGATGGCAGAACGACGGCGTAGGAAGAAGCTCAATGATCGACTCTACATGCTTAGGTCCGTTGTTCCTAAGATTAGCAAAGTAAGTTTGAGTTCTTGCATCTCACTCACTCAGCCTTTCTCAAATTTTCAATTTTCAATTGTAGTTGGTTTGATTTGGAATGGATCTCTTTGA	1098	0.531	MMSRMNSVGWMEEREDENNSASWARNKPNATIIATDTTTTSKPTTTAAAGFVENNSTRDDLASLCAFKPMLELDDEWYISSHHQHNNHHPQDMTFSPTFPDSDNLLLPAVDSSSSSSVFTNLDPSSSHLHYFLPPKPPTLSSLLNPFDIPFLDPQASSSFPLLPSAHFPSDTPPQTATATAFAGFHSLDDGSSKPLFHQRSKILRPLESLTPSGAPPTLFQKRAALRKNMSGGEGSEKKRKEREEVVEDVSFDGSGLNYDSDDFTEINNNGGKVDEGSAKKGGNSSNANSSVTGLDQKGKRKGMPAKNLMAERRRRKKLNDRLYMLRSVVPKISKVSLSSCISLTQPFSNFQFSIVVGLIWNGSL*	366

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Annotation information

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Seq ID	Length	Analysis	Description	Start	End	IPR	GO
Phac9g02692	365	MobiDBLite	consensus disorder prediction	280	296	-	-
Phac9g02692	365	SUPERFAMILY	HLH, helix-loop-helix DNA-binding domain	300	340	IPR036638	GO:0046983
Phac9g02692	365	ProSiteProfiles	Myc-type, basic helix-loop-helix (bHLH) domain profile.	303	352	IPR011598	GO:0046983
Phac9g02692	365	PANTHER	TRANSCRIPTION FACTOR SCREAM2-RELATED	134	340	-	-
Phac9g02692	365	MobiDBLite	consensus disorder prediction	232	250	-	-
Phac9g02692	365	Pfam	Helix-loop-helix DNA-binding domain	310	335	IPR011598	GO:0046983
Phac9g02692	365	MobiDBLite	consensus disorder prediction	229	309	-	-
Phac9g02692	365	MobiDBLite	consensus disorder prediction	1	28	-	-
Phac9g02692	365	Gene3D	-	296	347	IPR036638	GO:0046983

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Duplication type information

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Select	Gene	Chromosome	Start	End	Duplicated_type
	Phac9g02692	Phac-Chr9	25573612	25576744	Dispersed/Tandem

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Functional genes information

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Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Phac9g02692	195	337	Basic Helix-Loop-Helix Transcription Factor Gene Family	AT1G12860	50.327	3.51e-29	113

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Transcription factors information

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Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	bHLH	Phac9g02692		HLH	0.00014	No_clan

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Pathway information

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Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Phac9g02692	-		-	gmx:100217332	330.487

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