LGRPv2

Gene search

Sequence information

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Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Phac9g02690	ATGGCATCATCCGAGGTGACGATGAAGGGAAATTGCTTGAACCATATCGACGGCGGAGCTTCGGAGGCTCAGTCGCCGGCCACGGCCAAAGACGCAGAAGCTGCACTTTTCAGGGAACTGTGGCACGCGTGTGCCGGTCCTCTTGTGACCGTGCCGCGCGAAGGAGAGCGCGTGTTTTATTTTCCTCAGGGACATATCGAGCAGGTTGAAGCGTCGACGAATCAGGTGGCGGACCAGCACATGCCCGTTTACGATCTCCCACCCAAGATCCTTTGTCGGGTCATCAACGTGCAGCTGAAGGCCGAGCCCGACACGGATGAGGTGTTCGCTCAGGTCACCTTGCTTCCGGAGCCAAATCAAAATGAGAATGACGTGGAGAAAGAGCCGCCACCGCCACCGCCTCCGCGGTTTCACGTCCATTCTTTCTGTAAAACCCTGACAGCGTCCGATACCAGTACCCATGGTGGGTTTTCCGTGCTGAGACGGCATGCTGATGAATGCCTTCCCCCTCTGGATATGTCGAAGCAGCCACCCACTCAGGAATTGGCAGCAAAGGATCTTCATGGGAACGAATGGCGATTTAAACATATCTTTCGGGGTCAACCCCGTAGACACTTGCTTCAGAGTGGTTGGAGTGTTTTTGTTAGTTCCAAAAGGCTTGTCGCTGGGGATGCGTTTATATTTCTTAGAGGTGAGAATGGGGAACTTCGAGTTGGTGTCAGGCGAGCAATGAGACAGCAGGGTAATGTTCCATCCTCAGTTATCTCCAGTCACAGCATGCATCTTGGGGTCCTTGCAACTGCTTGGCATGCCATCTTGACGGGGACAATCTTCACTGTCTATTACAAACCTAGGACTAGTCCAGCTGAATTCATTGTTCCGTATGATCAATATATGGAGTCTCTCAAAAACAGTTATAGCATCGGGATGCGGTTCAAAATGAGGTTTGAAGGAGAAGAGGCCCCAGAGCAGAGGTTTACTGGTACAATTGTTGGAATAGAAGATTCAGATCCCAACAGGTGGAGGGAATCTAAATGGAGATGCCTCAAGGTGAGATGGGATGAAACATCTAACACCCCTCGTCCTGAGAGGGTTTCCCCTTGGAAAATAGAGCCCGCTCTTGCGCCTCCGGCTCTAAATCCTCTTTCAATGCCCAGGCCTAAAAGGCCTCGGTCTAATGCAATTCCTCCATCCCCAGATTCTTCTGTCCTTACTCGAGAAGCATCATCTAAAGTAAGCATAGACCCTTCACCGGCAAATGGATTTCCAAGGGTCTTGCAAGGTCAAGAATTCTCGACCTTGAGAGGCAATTTTGCTGAAAGCATTGACTCTGATGCCGCTGAGAAATCTGTTGTTTGGCCGCCTGCTGCAGTAGATGATGAAAAGATTGATGTTTCTACGTCAAGGAGGTATGGGTCGGAGAGCTGGATGTCAATGGGAAGAAACGAGCCGACATATTCTGATCTTCTTTCAGGCTTTGGCGCCGGTGGGGATTCTTCTCATTCATCCTTCATGGATCAAATGAGCCCTGTTGCTTATCCCTCGAGAAAGCAATCGTCGGATCACGAAGGCAAACTTCACATGCCTCAGCCGTGGCCTGTAATGCCCTCTAGTCTTTCATTGAATATATTGGACTCTAATACAAAAGGTCCTGCACATGGTGGTGATCCAACTTACCAAGCTCGAGGGAATTTGAGGTACAGTGCATTTGGTGAATACCCTGCACTGCATGGTCATAAAGTTGAGCATTCACATGGAAACTTGATGCCGCCACCCCCACCTGCACCTGTCAATCAATATCAGAGTCCTTGTTCAAGAGAACTTATGTTAAAACCAGTGTCAGCAAAAACATTTGAGGCTGTGAAGTTAAAAGATGGTGACTGTAAGCTATTTGGCTTCTCACTTATCAGTGGCCCTATTGTACCAGAGCCTCCTGTATCGCAAAGAAATGTGAACGAACCTACTGGTCAGATGCATCTTACGCCACACCAACAAAGAACATCCGAAAATGATGAGAAGTCAGACCACTCAAAGGGCTCAAAAACTGCAGATGATCTAGTTGTTGATGACCATGATAGACCATTACAGGCTTCTCAGCTGCATGCGAAAGATGGTCAAGCCAAACCCCTCAGTAGTTCTGCTAGGAGTTGCACTAAAGTTCACAAGAAGGGCATTGCACTTGGTAGGTCAGTGGACCTCACAAAATACACTGGCTATGATGAATTAGTAGCTGAATTGGATCAGCTGTTTGAATTTGAGGGAGAATTATTGTCAACTAAAAAAGATTGGCTTATTGTCTATACGGATAATGAGGGTGATATGATGCTTGTAGGCGATGACCCGTGGCAGGAATTCTGTGCCATGGTTCGCAAAATTTACATCTACCCTAAAGAGGAGATCCAGAAAATGAGCCCGGGTACCTTGAGCTCAAAAAATGAAGAGAACCAGTCGGGTAGTGAAGGTGCAGATGCAAAAGATGTTAAATGTCTGCCGCCTCAAAAGTTCAATTATGAAAATGGACTTGACGCGTGA	2532	0.4803	MASSEVTMKGNCLNHIDGGASEAQSPATAKDAEAALFRELWHACAGPLVTVPREGERVFYFPQGHIEQVEASTNQVADQHMPVYDLPPKILCRVINVQLKAEPDTDEVFAQVTLLPEPNQNENDVEKEPPPPPPPRFHVHSFCKTLTASDTSTHGGFSVLRRHADECLPPLDMSKQPPTQELAAKDLHGNEWRFKHIFRGQPRRHLLQSGWSVFVSSKRLVAGDAFIFLRGENGELRVGVRRAMRQQGNVPSSVISSHSMHLGVLATAWHAILTGTIFTVYYKPRTSPAEFIVPYDQYMESLKNSYSIGMRFKMRFEGEEAPEQRFTGTIVGIEDSDPNRWRESKWRCLKVRWDETSNTPRPERVSPWKIEPALAPPALNPLSMPRPKRPRSNAIPPSPDSSVLTREASSKVSIDPSPANGFPRVLQGQEFSTLRGNFAESIDSDAAEKSVVWPPAAVDDEKIDVSTSRRYGSESWMSMGRNEPTYSDLLSGFGAGGDSSHSSFMDQMSPVAYPSRKQSSDHEGKLHMPQPWPVMPSSLSLNILDSNTKGPAHGGDPTYQARGNLRYSAFGEYPALHGHKVEHSHGNLMPPPPPAPVNQYQSPCSRELMLKPVSAKTFEAVKLKDGDCKLFGFSLISGPIVPEPPVSQRNVNEPTGQMHLTPHQQRTSENDEKSDHSKGSKTADDLVVDDHDRPLQASQLHAKDGQAKPLSSSARSCTKVHKKGIALGRSVDLTKYTGYDELVAELDQLFEFEGELLSTKKDWLIVYTDNEGDMMLVGDDPWQEFCAMVRKIYIYPKEEIQKMSPGTLSSKNEENQSGSEGADAKDVKCLPPQKFNYENGLDA*	844

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Annotation information

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Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Phac9g02690	843	MobiDBLite	consensus disorder prediction	648	664	-	-
	Phac9g02690	843	MobiDBLite	consensus disorder prediction	395	416	-	-
	Phac9g02690	843	FunFam	Auxin response factor	305	377	-	-
	Phac9g02690	843	SUPERFAMILY	DNA-binding pseudobarrel domain	138	271	IPR015300	-
	Phac9g02690	843	ProSiteProfiles	PB1 domain profile.	715	797	IPR000270	GO:0005515
	Phac9g02690	843	SMART	B3_2	142	244	IPR003340	GO:0003677
	Phac9g02690	843	MobiDBLite	consensus disorder prediction	641	688	-	-
	Phac9g02690	843	MobiDBLite	consensus disorder prediction	665	688	-	-
	Phac9g02690	843	FunFam	Auxin response factor	710	804	-	-
	Phac9g02690	843	ProSiteProfiles	B3 DNA-binding domain profile.	142	244	IPR003340	GO:0003677

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Duplication type information

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Select	Gene	Chromosome	Start	End	Duplicated_type
	Phac9g02690	Phac-Chr9	25567598	25573476	Dispersed/Tandem

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Functional genes information

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Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Phac9g02690	1	828	B3 DNA Binding Superfamily	AT5G62000	64.699	0.0	1080

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Transcription factors information

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Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	B3-ARF	Phac9g02690		AUX_IAA	2.8e-12	CL0072

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Pathway information

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Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Phac9g02690	-		-	gmx:100803498	1550.03

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