Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phac9g02680 ATGCCTTCTGAAATAATGGAGAAGAGGGGTGTGTCTGCCTCATCCCACTTTTTGGATGACATTTCCTATGCTTCTGAGAAAAATATTGGATTACGGAAGCCAAAATCTATTCATGACCATTTTCTACAGGGCAAGAGTGAAATGGCGGCATCACCTGGCTGTATTTTGAATACTTCATCACCCCGTGCAACAAATGCAAAATCTGGTTTGCCACTGTCTCATACTACTCTATCTGGGGAAACTACAGAAGACCTACATTTTGGCAGAGAAGCAGGCACTATAGAGATGCTGAAGGATTCCATGGAAACATTTAATTATAGTAAGAGGTCATGGTCTAATGTGCATAGGCAGCCAGCATCTAGCTCATATGGTCTAATTGGGAGCAAGATTGTCCCTGGTGCTGCCTCATGTGAAAGTAGTCTATTTTCAAGCTCGCTGTCTGAGATGTTTAGCCAAAAGTTGAGGTTATTGGGGAATGGAGTGCTGTCTGGTCAACCCATTACTGTTGGTTCCCTTCCTGAGGAAGAACCGTATAAATCTCTAGGAGAAATTGAGGCTGACACTATTGGAAATCTCCTTCCTGATGAAGATGACCTGTTTTCTGGAGTCACTGACGAGTTAGGATGCAGTACTCGTGCTAGAATGAATGATGATTTTGAAGATTTTGATTTGTTCAGCAGCAGTGGAGGCATGGAATTGGAAGGAGATGAACATCTAATTTCTGGAAATGGAACCAGTTTCGTGGATGAAGATCCTGATTACTTTGGAGTTTCTAAAGGAAAAATTCCATTCCGTGAACAATCTTCTAGAACACTTTTTGTTAGAAATATCAATAGCAATGTTGAAGACTCTGAACTTAAGGCTCTCTTTGAGCAATATGGAGATATCCGAACCATTTACACTGCCTGCAAGCATCGTGGGTTTGTTATGATTTCATATTATGATCTAAGGGCAGCACAAAAAGCAATGAAGGCACTTCAAAATAGGTCATTGAGATCTAGGAAACTGGATATACATTATTCAATTCCAAAGGGCAATGCTCCAGAGAAAGATATTGGTCATGGTACACTGATGATATCTGATCTTGATTCATCTGTTTTGAAAGATGAACTTAAACAGATTTTTGGGTTTTATGGAGAAATTAGAGATATCTATGAATATCCGCAATTGAATCATGTCAAATTTATCGAATTTTATGATGTTCGAGCTGCAGAAGCTTCTCTTCGTGCATTGAATGGGATCTGCTTTTCTGGGAAGCACATTAAGCTTGAGCCCAGCCTTCCCATGATTGCAACATGTATGATGCACCAGTCTCAGAAGGGACAAGATGAACCTGATCTTGGTCATAGTCTTAGTGAGAACATTTCCTTAAGACATAATGGAGTGTCATCTGGATTTATTGCATCTGCTGGCAGCTTGGAAAACGGATATAATCAAGGATTTCATTCTGCAACACGGCAACCTACTTTCATTGATAAATCACTATTTAATATGAATTCTAACATTCACAAGACCGGAAGAGGGGCATCTAATGGAAAAGTATCTGGTGTTTTTGAGGCCAGTAACACTATTGACGCAATGAAATTTGCATCCGTTTCGAGGTTCCATCCTCATTCTTTACCAGAATATCGCGATAGCTTAGCTAATGGCAGTCCTTACAACTTTTCAAGTACCATTAACATGGCTGCCAATATTGGAAATGGATCAACGGAATCATCTGACAGCAGGCACATTCAGGGAATAAACTCAACTGGGAACCTAGCAGAGTTTAATACAGGAGGAAATGGAAACCGCCCCAATCATGGACTTTATCATATGTGGAATGGCTCCAACTTGCATCAACAACCTCCTTCAAATGCCATGCTTTGGCAGAAAACACCGTCCTTTGTTAATGGTGCTGGTTCTCCATGTCTTCCACAGATACCCAGCTTTCCTAGAACACCTCCCCATGTGCTTAGAGCATCACATATAGACCATCAAGTGGGATCAGCACCAGTTGTTACTGCCTCGCCCTGGGAAAGACAACATTCTTACTTGGGAGAGTCGCCTGATGGTTCTGGTTTTAGATTAGGTTCTGTAGGAAGTCCTGGCTTTCATGGTAGCTGGCAGATGCATCCTCCTGCTTCTCACAACATGTTTGCTCATGTCAGTGGGAATGGTACAGAATTGACATCAAATGCTGGGCAGGGCTCTCCTAAGCAGTTATCACATGTTTTACCTGGGAGACTTCCCATGAATTTGGTTTCTAAATTTGATTCTACCAATGAACGTATGAGAAACCTCTATCCTCGAAGAAGCGAACCAAACACTAACAGCAATGCAGATAAAAAACAGTATGAACTTGACCTAGGCCGCATATTGCGTGGGGATGACAACCGAACAACGCTCATGATAAAAAATATTCCGAATAAGTATACTTCAAAGATGCTTCTTGCTGCCATTGATGAACATTGTCGAGGAACATATGATTTTCTGTATTTGCCAATTGATTTCAAGAACAAATGTAATGTTGGCTATGCATTCATCAATATGATTGATCCTTGTCAAATTATTCCATTCCACAAGGCCTTTAACGGGAAAAAATGGGAGAAGTTCAACAGTGAAAAGGTAGCAGTACTCGCATATGCCCGAATTCAAGGAAAAGCTGCTCTTATTGCTCATTTTCAGAATTCAAGCCTGATGAATGAGGATAAACGTTGCCGCCCTATTCTTTTCCATACAGATGGCCCAAATGCTGGCGATCCGGAGCCTTTTCCCTTGGGTAACAACATTAGAGTGAGGCCAGGGAAATCTCGCGCAAATGGTAGTGAGGAGAATCGCAGCCAAGGGAATCCTTCATCTTTGGCAAGTGGAGAAGAGTCTGGGAATGGAATGGAATCATCTTCGATCTCTTCAAAAAACTCTGACTGA 2910 0.4148 MPSEIMEKRGVSASSHFLDDISYASEKNIGLRKPKSIHDHFLQGKSEMAASPGCILNTSSPRATNAKSGLPLSHTTLSGETTEDLHFGREAGTIEMLKDSMETFNYSKRSWSNVHRQPASSSYGLIGSKIVPGAASCESSLFSSSLSEMFSQKLRLLGNGVLSGQPITVGSLPEEEPYKSLGEIEADTIGNLLPDEDDLFSGVTDELGCSTRARMNDDFEDFDLFSSSGGMELEGDEHLISGNGTSFVDEDPDYFGVSKGKIPFREQSSRTLFVRNINSNVEDSELKALFEQYGDIRTIYTACKHRGFVMISYYDLRAAQKAMKALQNRSLRSRKLDIHYSIPKGNAPEKDIGHGTLMISDLDSSVLKDELKQIFGFYGEIRDIYEYPQLNHVKFIEFYDVRAAEASLRALNGICFSGKHIKLEPSLPMIATCMMHQSQKGQDEPDLGHSLSENISLRHNGVSSGFIASAGSLENGYNQGFHSATRQPTFIDKSLFNMNSNIHKTGRGASNGKVSGVFEASNTIDAMKFASVSRFHPHSLPEYRDSLANGSPYNFSSTINMAANIGNGSTESSDSRHIQGINSTGNLAEFNTGGNGNRPNHGLYHMWNGSNLHQQPPSNAMLWQKTPSFVNGAGSPCLPQIPSFPRTPPHVLRASHIDHQVGSAPVVTASPWERQHSYLGESPDGSGFRLGSVGSPGFHGSWQMHPPASHNMFAHVSGNGTELTSNAGQGSPKQLSHVLPGRLPMNLVSKFDSTNERMRNLYPRRSEPNTNSNADKKQYELDLGRILRGDDNRTTLMIKNIPNKYTSKMLLAAIDEHCRGTYDFLYLPIDFKNKCNVGYAFINMIDPCQIIPFHKAFNGKKWEKFNSEKVAVLAYARIQGKAALIAHFQNSSLMNEDKRCRPILFHTDGPNAGDPEPFPLGNNIRVRPGKSRANGSEENRSQGNPSSLASGEESGNGMESSSISSKNSD* 970
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phac9g02680 969 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 355 428 IPR000504 GO:0003723
Phac9g02680 969 CDD RRM1_MEI2_like 269 344 IPR034453 -
Phac9g02680 969 Pfam RNA recognition motif 2 793 889 IPR007201 -
Phac9g02680 969 MobiDBLite consensus disorder prediction 935 969 - -
Phac9g02680 969 PANTHER RNA RECOGNITION MOTIF-CONTAINING 46 964 - -
Phac9g02680 969 CDD RRM3_MEI2_like 796 881 IPR034454 -
Phac9g02680 969 MobiDBLite consensus disorder prediction 904 969 - -
Phac9g02680 969 SMART rrm1_1 271 339 IPR000504 GO:0003723
Phac9g02680 969 SMART rrm1_1 356 424 IPR000504 GO:0003723
Phac9g02680 969 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 272 336 IPR000504 GO:0003723
Phac9g02680 969 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 357 422 IPR000504 GO:0003723
Phac9g02680 969 FunFam Protein MEI2-like 1 354 448 - -
Phac9g02680 969 FunFam MEI2-like protein 5 isoform 2 259 353 - -
Phac9g02680 969 SUPERFAMILY RNA-binding domain, RBD 795 880 IPR035979 GO:0003676
Phac9g02680 969 SUPERFAMILY RNA-binding domain, RBD 268 425 IPR035979 GO:0003676
Phac9g02680 969 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 270 343 IPR000504 GO:0003723
Phac9g02680 969 Gene3D - 249 351 IPR012677 -
Phac9g02680 969 Gene3D - 352 446 IPR012677 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phac9g02680 Phac-Chr9 25408062 25416773 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Phac9g02680 267 421 Eukaryotic Initiation Factors Gene Family AT3G16380 26.136 2.14e-09 59.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Phac9g02680 - - gmx:100797616 1703.72