Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phac9g02604 ATGAAGGAAGACCAAATTGAAATTACCATTCCTCACTTGTTCAGATGCCCCATCAGTTTGGACTTGTTCGAAGATCCAGTAACTTTGTCCACCGGCCAAACCTATGACAGATCGAGCATAGAGAAATGGTTCTCTGCTGGAAATCTCACATGCCCTGTAACAATGCAGAAGCTTCGTGATGCATCCATTGTTCCCAACCACACTCTTCGCCACTTGATCGATCAGTGGCTCCAATTGGGTCCCCAATTTGGTAACTGTGCTACTATTGATCATTTAGCCGCACTAAAGCATTCCCTTGAATCTCCCGAATTGGAAAACAAGCTCCAAGCACTTGAGAAAATTAGTGTTCTCTCTGATGAGTATTGCTCCTTCAGAAAATCTTTTTTCCATCAACTGAGTTTCTTGCCCCTACTTTTGGAACTTGTTTTTGGCACTGAGTTCACAAAATGTCACACCAAGTTGACGGAGCTAGCACTTTGTTGCATTCTAAAGTTGTTACCTCTTGTGAGTTTGGAGGCTCTAAATATGATCAAAGACGAGTCTAAGTTAGCAACGTTCTTACTACTATTTGAAAAGGGAACTAGCTCGGTTAAGACCAGTCTTTGTCATCTTATAGATTCTACAGCATCACCCCAAACAGAAGAGGTATGTCACATGCTAGGACACTCTCAAAAACTACTGCGTGAAATTGTCGTACTTGTTCGTCAAGGTTCTGAGGTTTCTAAGGTTGCAATTAAGGCCATGTTATCATTATGTTCCTTGCAATCTAACCGAGACAATTTGGTGAGGGCAGGAGCAATTGATGGGGTCATAATATACATTTCAGGTTGTGAAACAAGGCAGAAGAACATGGCTCCATTTGCGATGGCAATAATAAAGAACCTTCTGGTGCTAGAGAGTGCTAAAGAGGCACTGGTGAATCACCCTTATGGGGTTGCAACTTTGGTGAAGTTGGTTTTCAGAGTGTGTAATGAAGAGTGTAGTGAGAGTGCTGTTGGGATACTTGCAATCGTTTGCCGTGATTTTGGGCGAGCAAGAGAGGAAGCAATCGGTGCTGGAGTTTTGACTCAGTTGCTGTTTCTTCTCCAGAGTCAGTGTGGCCCCAAAACTAAAACAAAAGCAAGAATGCTGCTCAAGTTGCTAAGATCAAAGTGGATTGAGGAACCAAAACAGGTGTAG 1179 0.4283 MKEDQIEITIPHLFRCPISLDLFEDPVTLSTGQTYDRSSIEKWFSAGNLTCPVTMQKLRDASIVPNHTLRHLIDQWLQLGPQFGNCATIDHLAALKHSLESPELENKLQALEKISVLSDEYCSFRKSFFHQLSFLPLLLELVFGTEFTKCHTKLTELALCCILKLLPLVSLEALNMIKDESKLATFLLLFEKGTSSVKTSLCHLIDSTASPQTEEVCHMLGHSQKLLREIVVLVRQGSEVSKVAIKAMLSLCSLQSNRDNLVRAGAIDGVIIYISGCETRQKNMAPFAMAIIKNLLVLESAKEALVNHPYGVATLVKLVFRVCNEECSESAVGILAIVCRDFGRAREEAIGAGVLTQLLFLLQSQCGPKTKTKARMLLKLLRSKWIEEPKQV* 393
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phac9g02604 392 SUPERFAMILY ARM repeat 93 381 IPR016024 -
Phac9g02604 392 Gene3D - 85 383 IPR011989 -
Phac9g02604 392 FunFam RING-type E3 ubiquitin transferase 10 81 - -
Phac9g02604 392 SUPERFAMILY RING/U-box 4 78 - -
Phac9g02604 392 ProSiteProfiles U-box domain profile. 9 83 IPR003613 GO:0004842|GO:0016567
Phac9g02604 392 SMART Ubox_2 13 76 IPR003613 GO:0004842|GO:0016567
Phac9g02604 392 Pfam U-box domain 10 78 IPR003613 GO:0004842|GO:0016567
Phac9g02604 392 CDD RING-Ubox_PUB 11 61 IPR045210 -
Phac9g02604 392 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1 83 IPR013083 -
Phac9g02604 392 PANTHER WDSAM1 PROTEIN 7 389 IPR045185 GO:0061630
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phac9g02604 Phac-Chr9 24609462 24611488 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Phac9g02604 8 388 U-box Gene Family AT1G49780 29.657 1.84e-42 152
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Phac9g02604 - - gmx:100819468 650.588