Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phac9g02579 ATGAGCAACAACAACTCCCGAAAGCGCGCGCCGCCGCCGGTGAAACCTCCGCCGGCGAAGCAAGCCTTCTTGTCTCAGGAAGAGGAGTTCATGGACGAAGACGTGTTTATCGAGCAAACCCTCATTTCTGAAGACGAAGAGTCCATGATTCTCCGCGACATCGAGCAGCGCCAGGCCCTCGCTGCTCGCTTATCAAAGTGGACACGTCCTTCTCTCTCTGCCGATTACGTCGCACAATCTTGTAGCGTCGTTTTTCAGCAGTTGGAGATTGATTATGTGATCGGGGAGAGTCACAGGGAGTTGCTGCCGAATTTGTCTGGACCTGCTGCCATCATCAGAATCTTTGGAGTTACGAAGGAAGGACACAGTGTTTGCTGCAATGTTCATGGGTTTGAACCATATTTCTACATCTCTTGCCCTCCTGGAATGGGTCCAGATGATATCTCTCATTTTCACCAAACACTTGAGGGAAGGATGAGAGAAGCCAATAGAAATAGTAACGTAGGAAAATTCGTTCGCCGCATTGAAATGGTGCAGAGGAGAAGTATTATGTACTATCAGCAATCTGATTCCCATCCCTTTCTCAAAATTGTAGTTGCACTCCCAACAATGGTTGCCAGCTGCCGTGGTATTCTTGATAGGGGTATTCAGCTTGATGGTCTGGGAATGAAGAGCTTCCTGACTTATGAAAGCAATGTACTTTTTGCCCTACGGTTCATGATTGATTGCAACATAGTAGGTGGAAATTGGATTGAAATTCCAGCAGGAAAATATAAGAAGATAGCGAAAAGCTTGTCTTATTGCCAGTTGGAGTTTGATTGCCTGTATTCTGATTTGATTAGTCATGCTCCAGAAGGGGAATATTCAAAGATGGCTCCATTTCGCATATTGAGTTTTGACATTGAGTGTGCTGGTCGTAAAGGTCATTTTCCCGAGCCTAGCCATGATCCTGTTATCCAGATTGCTAATTTGGTTACTTTACAAGGAGAAGACCAGCCACTTATTCGTAATGTGATGACCCTTAAATCATGCTCTCCTATTGTTGGTGTTGATGTGATGTCATTTGATACGGAAAGAGAAGTCCTGCTAGCTTGGAGGGATTTAATTCTGGAAGTGGACCCTGATATTATTATTGGATATAACATCTGCAAATTTGACCTGCCATATCTTATTGAGAGAGCTGCAAACCTGAAGATAGCAGAATTTCCTATTCTTGGCCGTATTAGGAATAGTAGAGTTCGGGTAAAGGATACAACTTTCTCGTCAAGGCAGTACGGGACCAGGGAAAGCAAAGAAGTTACAGTAGAAGGGAGAGTTCAGTTTGACTTACTCCAGGTCATGCAGAGAGACTACAAATTAAGTTCTTATTCACTAAATTCTGTCTCAGCACACTTCCTTTCTGAGCAGAAAGAGGATGTCCATCATTCTATCATATCTGAACTTCAGAATGGAACCGCAGAAACTAGGAGGCGCCTTGCTGTGTATTGTTTGAAGGATGCATATCTCCCTCAGCGGCTTTTGGATAAATTGATGCTCATTTACAACTATGTGGAGATGGCTCGAGTAACAGGTGTTCCAATTTCTTTTCTACTTTCCAGAGGCCAAAGCATAAAGGTACTTTCACAACTTCTTAGGAAGGCAAGACAGAAAAATCTGGTCATTCCCAATGTCAAACAGGTTGGGTCTGAACAAGGAACATTTGAAGGTGCCACTGTGACTTCTGAAGATGCTCGCAAGCTGAACATCCCTCCGGAGTCCGTGAACAGAACTCCATCTGGTGAAACATTTGTTAAAGCAAATCTGCAGAAGGGAATACTTCCTGAAATACTTGAAGAGCTATTAACAGCCCGAAAAAGGGCAAAAGCAGACTTAAAGGAGGCGAAGGATCCCCTGGAGAGGGCAGTGCTAGATGGTAGGCAGCTGGCCCTGAAAATTAGTGCAAATTCTGTGTATGGGTTTACTGGGGCTACCATTGGTCAGTTACCATGTTTGGAGATATCATCGAGTGTAACAAGCTATGGTCGACAAATGATTGAGCACACAAAAAAACTTGTGGGAGATAAATTTACGACACTTAATGGCTATGAACACAATGCTGAGGCTATGAACTTGGGGAGAGAAGCTGCCGAATATATAAGTGGAACTTTCACAAAACCCATCAAACTAGAATTTGAGAAGGTTTATTATCCATATCTATTGATTAGCAAGAAGAGATATGCTGGTTTGTTTTGGACAAAACCAGACAACTTTGACAAAATGGACACTAAAGGTATTGAAACAGTTCGAAGAGACAATTGTTTGTTGGTAAAAAACTTGGTGAACGATTGTCTTCACAAAATACTGATTGACAGGGATATTCCGGGGGCTGTCCAGTATGTCAAGAACGCAATTTCAGATCTTCTCATGAATCGGATGGATTTATCTCTGCTGGGTTTAACAAAGACAGGAGATGATTATGAAGTAAAGGCAGCTCATGTTGAACTTGCTGAAAGGATGCGCAAGCGAGATGCTGCCACTGCTCCAAATGTTGGAGATAGAGTACCTTATGTAATTATCAAAGCTGCAAAAGGTGCAAAGGCGTATGAGAAATCAGAGGACCCTATTTATGTTCTAGAGAACAACATACCTATAGATCCTCAATACTATCTTGAGAATCAAATTAGCAAGCCGATTCTGAGAATTTTTGAGCCAATTCTGAAGAATGCTAGCAGAGAACTTCTCCATGGAGATCATACAAGATCTATTTCAATTTCTACTCCGTCAAACATTGGCTTATTGAAATATGCTAAGAGAAGCCTTACCTGCATTGGCTGTAAAGCTGTACTAGGATACTATACTACGTGTGGGATAACATTTTGTGGAGGAGGTGGCATAGCAAGGATCATCACACCGTCTGTTCACATTGCAAAGGAAGGGAAGCTGAACTATACTGTAAAACAGTATCTCAAGTGTCTGAGTTGGAGAAGCTTTTTGGGAGGTTGTGGACACAGTGTCAGGAGTGCCAAGGTTCACTTCATCAAGATGTTCTCTGCACCAGTCGGGATTGTCCAATTTTTTATCGACGAAAAAAGGCACAGAAAGATATGTCCGAAGCAAAATCCCAATTGGACCGGTGGAGCTTTTGAGTTTTGCCAAAAATTTGGTTCATGTGCAGAATTTGACCTTGGGAATCTCCGAAGTCAATGGACAAAAACTGGTGTTGGTGTTCGCCACAATCCTGACATTATTTATTATCTGAGAGTAAGCCCACAAATTTTGGTGATTGAAAGATTTATGTGGAATACTCAAATGATAATAAGCTATAGTTATAGGATGACATCAGCCTGA 3327 0.4241 MSNNNSRKRAPPPVKPPPAKQAFLSQEEEFMDEDVFIEQTLISEDEESMILRDIEQRQALAARLSKWTRPSLSADYVAQSCSVVFQQLEIDYVIGESHRELLPNLSGPAAIIRIFGVTKEGHSVCCNVHGFEPYFYISCPPGMGPDDISHFHQTLEGRMREANRNSNVGKFVRRIEMVQRRSIMYYQQSDSHPFLKIVVALPTMVASCRGILDRGIQLDGLGMKSFLTYESNVLFALRFMIDCNIVGGNWIEIPAGKYKKIAKSLSYCQLEFDCLYSDLISHAPEGEYSKMAPFRILSFDIECAGRKGHFPEPSHDPVIQIANLVTLQGEDQPLIRNVMTLKSCSPIVGVDVMSFDTEREVLLAWRDLILEVDPDIIIGYNICKFDLPYLIERAANLKIAEFPILGRIRNSRVRVKDTTFSSRQYGTRESKEVTVEGRVQFDLLQVMQRDYKLSSYSLNSVSAHFLSEQKEDVHHSIISELQNGTAETRRRLAVYCLKDAYLPQRLLDKLMLIYNYVEMARVTGVPISFLLSRGQSIKVLSQLLRKARQKNLVIPNVKQVGSEQGTFEGATVTSEDARKLNIPPESVNRTPSGETFVKANLQKGILPEILEELLTARKRAKADLKEAKDPLERAVLDGRQLALKISANSVYGFTGATIGQLPCLEISSSVTSYGRQMIEHTKKLVGDKFTTLNGYEHNAEAMNLGREAAEYISGTFTKPIKLEFEKVYYPYLLISKKRYAGLFWTKPDNFDKMDTKGIETVRRDNCLLVKNLVNDCLHKILIDRDIPGAVQYVKNAISDLLMNRMDLSLLGLTKTGDDYEVKAAHVELAERMRKRDAATAPNVGDRVPYVIIKAAKGAKAYEKSEDPIYVLENNIPIDPQYYLENQISKPILRIFEPILKNASRELLHGDHTRSISISTPSNIGLLKYAKRSLTCIGCKAVLGYYTTCGITFCGGGGIARIITPSVHIAKEGKLNYTVKQYLKCLSWRSFLGGCGHSVRSAKVHFIKMFSAPVGIVQFFIDEKRHRKICPKQNPNWTGGAFEFCQKFGSCAEFDLGNLRSQWTKTGVGVRHNPDIIYYLRVSPQILVIERFMWNTQMIISYSYRMTSA* 1109
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phac9g02579 1108 Gene3D - 293 511 IPR036397 GO:0003676
Phac9g02579 1108 FunFam DNA polymerase 89 264 - -
Phac9g02579 1108 Pfam DNA polymerase family B, exonuclease domain 118 461 IPR006133 -
Phac9g02579 1108 CDD DNA_polB_delta_exo 288 517 - -
Phac9g02579 1108 Pfam DNA polymerase family B 693 898 IPR006134 GO:0000166|GO:0003677
Phac9g02579 1108 Gene3D - 757 908 IPR042087 -
Phac9g02579 1108 MobiDBLite consensus disorder prediction 1 21 - -
Phac9g02579 1108 SUPERFAMILY Ribonuclease H-like 109 531 IPR012337 -
Phac9g02579 1108 Gene3D DNA Polymerase, chain B, domain 1 88 263 - -
Phac9g02579 1108 Gene3D Palm domain of DNA polymerase 556 744 IPR023211 -
Phac9g02579 1108 SUPERFAMILY DNA/RNA polymerases 551 901 IPR043502 -
Phac9g02579 1108 SMART polmehr3 292 694 IPR006172 GO:0000166|GO:0003676|GO:0003887
Phac9g02579 1108 Gene3D Helix hairpin bin 602 653 - -
Phac9g02579 1108 PANTHER DNA POLYMERASE CATALYTIC SUBUNIT 68 574 - -
Phac9g02579 1108 FunFam DNA polymerase 332 565 - -
Phac9g02579 1108 FunFam DNA polymerase 604 656 - -
Phac9g02579 1108 FunFam DNA polymerase 757 909 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phac9g02579 Phac-Chr9 24341979 24357681 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Phac9g02579 7 949 Core DNA Replication Machinery Family AT5G63960 74.266 0.0 1545
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Phac9g02579 K02327 - gmx:548092 1810.42