Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phac9g02548 ATGGGATTTTACGGCGAGAAAGAATGGTACTTCTTTTCTCCTCGGGACCGCAAATACCCCAACGGCTCACGGCCGAACCGCGCCGCCGGTAGTGGGTATTGGAAGGCCACCGGCGCCGATAAACCGATCGGAAAGCCGAAGGCGCTCGGGATCAAGAAAGCTCTGGTTTTTTACTCGGGAAAAGCCCCGAAAGGAGAGAAAACCAATTGGATCATGCACGAATATCGCCTGGCCAATGTTGACCGATCAGCCTCCAAGAAAAACAACAACCTAAGGCTTGACGATTGGGTGTTGTGTCGAATTTACAACAAGAAAGGGAAGATTGAGAAATACAACACGGGGGCACAGAAAATGGAGGCTGGGGTGGTTGAAAATTTCGATCAGGAGATGAAGCCGGAGATTGAGAAGCTTAGGAATGAGCAATTGTTTATGGAGAGTTCAGAGTCGATGCACAGAGTGCAGACTGAGTCGAGCGGTTCAGAGCAGGTGGTTTCGGCGGACGTGAGGTGGGAGAGGGAGGTGCAGAGCCACCCCAAATGGAATGACATTGGGCTACAGCTTGAAAACGCCTTTGATTTTGAATACAATTACTTTGACAGTAATAACCTTTCGGTGGATGACCCTTTTGGGAATGTTGAGTACCAAATAGGCCACGTGTCTCCCTTGCAGGACATTCTCATGGAAGCCCTATTGATGTGA 699 0.4964 MGFYGEKEWYFFSPRDRKYPNGSRPNRAAGSGYWKATGADKPIGKPKALGIKKALVFYSGKAPKGEKTNWIMHEYRLANVDRSASKKNNNLRLDDWVLCRIYNKKGKIEKYNTGAQKMEAGVVENFDQEMKPEIEKLRNEQLFMESSESMHRVQTESSGSEQVVSADVRWEREVQSHPKWNDIGLQLENAFDFEYNYFDSNNLSVDDPFGNVEYQIGHVSPLQDILMEALLM* 233
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phac9g02548 232 Pfam No apical meristem (NAM) protein 5 77 IPR003441 GO:0003677|GO:0006355
Phac9g02548 232 Gene3D NAC domain 1 109 IPR036093 GO:0003677|GO:0006355
Phac9g02548 232 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 5 154 - -
Phac9g02548 232 SUPERFAMILY NAC domain 4 104 IPR036093 GO:0003677|GO:0006355
Phac9g02548 232 ProSiteProfiles NAC domain profile. 1 104 IPR003441 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phac9g02548 Phac-Chr9 23974229 23975935 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Phac9g02548 1 227 NAC Transcription Factor Family AT1G01720 56.118 9.91e-82 244
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Phac9g02548 NAM 7.5e-19 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Phac9g02548 - - gmx:100814504 369.392