Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phac9g02478 ATGGATACCAACCTAAACACTACATTCACCAACGTTAACACCACTTACAATCACCAGACCATGCCCACAGATCAACATAACATCACCCTCCACGATCATCATCATCATCAGCATCATCAGCATCACCAAATTCCAATGGGTGTTGGAATTTGGTCCAATCACCACCACCCTTTTCACACACACCCCTCTTCCTCTTCTTCAACTAATTTCCTAACGGAGGTGTTGGGAGTCCAGTTTGAAGAAGACGAAGAGGAAGAGCTGGGAGCGATGAAGGAGATGATGTACCAGATGGCAGCGATGCAACCGGTGGACATAGACCCTGCCACCGTCAGAAAACCAAAGAGGCGAAACGTCCGCATAAGCGATGACCCTCAGAGTGTGGCTGCACGCCACAGAAGAGAGAAGATCAGTGAGAAAATCCGCATCCTCCAAAGACTTGTCCCCGGTGGAACCAAAATGGACACTGCTTCCATGCTTGATGAAGCCATTCGCTATGTCAAGTTCTTGAAGAGACAAATCAGGTTGCTTCAATCAACACCACAAATTGATTGCATTAATGCTTCTGCTCCTAACTCTGATTGCCCTTTTGCACCAATTACATCGCACGCTTCCACCTCCATCAACAACCTGCCTCTTGGAATGGATTTCAACGCCACAATTCATGCCCATGCCGCTGATTGA 681 0.4758 MDTNLNTTFTNVNTTYNHQTMPTDQHNITLHDHHHHQHHQHHQIPMGVGIWSNHHHPFHTHPSSSSSTNFLTEVLGVQFEEDEEEELGAMKEMMYQMAAMQPVDIDPATVRKPKRRNVRISDDPQSVAARHRREKISEKIRILQRLVPGGTKMDTASMLDEAIRYVKFLKRQIRLLQSTPQIDCINASAPNSDCPFAPITSHASTSINNLPLGMDFNATIHAHAAD* 227
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phac9g02478 226 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 120 169 IPR011598 GO:0046983
Phac9g02478 226 SMART finulus 126 175 IPR011598 GO:0046983
Phac9g02478 226 Pfam Helix-loop-helix DNA-binding domain 130 169 IPR011598 GO:0046983
Phac9g02478 226 FunFam BHLH transcription factor 123 186 - -
Phac9g02478 226 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 125 179 IPR036638 GO:0046983
Phac9g02478 226 PANTHER TRANSCRIPTION FACTOR HEC3-RELATED 18 201 IPR045843 GO:0003700|GO:0006355
Phac9g02478 226 Gene3D - 123 183 IPR036638 GO:0046983
Phac9g02478 226 CDD bHLH_AtIND_like 121 178 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phac9g02478 Phac-Chr9 23474288 23475692 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Phac9g02478 89 182 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G00120 79.787 1.78e-48 156
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Phac9g02478 HLH 1.2e-06 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Phac9g02478 - - var:108331264 339.732