Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phac9g02471 ATGGCTTCAGCCACCTCTTCGCCTACGGCTCAGAGGCACGTTGGCTTCAGCCACCGCACGCAGGCGCCGTTCCAGCTGAACGACTCCTCGAGCCAGCTCCATGACGAGCTCCATGACGACTCGCCGCCGGTGAGGAAGTACCGGCTGATGTCAGACATAATGGCGCGCGCCCAGTACGCGGTGGTGGAGAGAGAGACGTATAGTGATCTGTTGTGCGAGCAATGCGGTTCCGGCGAGCTGTCGGAGGAGCTCCTTCTCTGCGACAAATGCGACAAAGGCTTCCACATGAAATGCGTGAGGCCGATTGTTGTGAGGATTCCGATTGGATCGTGGCTTTGTCCTAAGTGTCAGGGAGGGAAGAGAGTGCGGACTTTCTCGCAGAAGAGGATAATTGATTTCTTCGGGATTGGTAGGAGTTATTTTTATGCGGATGACAAGTGTTCTTCTCTGGGTTTTTGGACAATCTGTCTCATGCAATGTCTATCTGAAATCTATTGTTTGAAGGCAAAAGAGGCCAATCAAATATCTAAAGAGGCCAAGAAACGTAGGAAACGTTCAAGACCTCTGGTATTACATAAGAAAAAAAGGAGGTTGTTACCATTTGTTCCTTCAAAAGATCCTGTCCAGAGATTGAAACAGATGGGTTCCCTTGCTTCTGCTTTAACAGCATCAAATATAGAATTCTGTGATCACCTCACATACTCGCCTGGAATGGCTCCTAGATCTGCGAATCGATCCGCATTCGAAAACGGTGACATGCAGATTCTTTGCAAAGAAGACTTGGAGACAGTAGAACACTGCATTGCTATGTCTAAACGAGGCGAATTCCCTCCCTTTATGGTTGTTTATGATTTGTGTCAAGGTTATACTGTTGAGGCTGATGACCTAATCAAGGATATGACAGTTGTTGCTGAATACACTGGCGATGTGGATTACCTTCACAACCGGGAACGTGATGATTGTGACAGTATGATGACCCTTCTTCTTGGAAGAGAAAGTTCTCAAAGTCTTGTTATCTGTGCTGATAAGCGTGGAAACGTTGCTCGCTTTATAAGCGGGATAAACAATCATACACAGGAAGGTAGGAAGAAGCAAAACTGCAAATGTGTGAGATACAATGTTGGTGGTGAATGCAGGGTCTTTTTGGTTGCTACTCGTGATATTTTTAAGGGAGAAAGGCTTTATTATGATTATAATGGTTATGAGTATCACTATCCGACTCATCATTTTGTCTGA 1236 0.4595 MASATSSPTAQRHVGFSHRTQAPFQLNDSSSQLHDELHDDSPPVRKYRLMSDIMARAQYAVVERETYSDLLCEQCGSGELSEELLLCDKCDKGFHMKCVRPIVVRIPIGSWLCPKCQGGKRVRTFSQKRIIDFFGIGRSYFYADDKCSSLGFWTICLMQCLSEIYCLKAKEANQISKEAKKRRKRSRPLVLHKKKRRLLPFVPSKDPVQRLKQMGSLASALTASNIEFCDHLTYSPGMAPRSANRSAFENGDMQILCKEDLETVEHCIAMSKRGEFPPFMVVYDLCQGYTVEADDLIKDMTVVAEYTGDVDYLHNRERDDCDSMMTLLLGRESSQSLVICADKRGNVARFISGINNHTQEGRKKQNCKCVRYNVGGECRVFLVATRDIFKGERLYYDYNGYEYHYPTHHFV* 412
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phac9g02471 411 ProSiteProfiles Zinc finger PHD-type profile. 69 119 IPR019787 -
Phac9g02471 411 PANTHER N-LYSINE METHYLTRANSFERASE KMT5A 176 409 - -
Phac9g02471 411 FunFam Histone-lysine N-methyltransferase ATXR5 182 411 - -
Phac9g02471 411 ProSitePatterns Zinc finger PHD-type signature. 72 116 IPR019786 -
Phac9g02471 411 Gene3D SET domain 182 411 IPR046341 -
Phac9g02471 411 CDD PHD_RSF1 71 116 - -
Phac9g02471 411 Pfam SET domain 96 399 IPR001214 GO:0005515
Phac9g02471 411 SMART PHD_3 71 117 IPR001965 -
Phac9g02471 411 Pfam PHD-finger 72 117 IPR019787 -
Phac9g02471 411 SUPERFAMILY SET domain 269 400 IPR046341 -
Phac9g02471 411 SUPERFAMILY FYVE/PHD zinc finger 62 122 IPR011011 -
Phac9g02471 411 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 17 130 IPR013083 -
Phac9g02471 411 CDD SET_ATXR5_6-like 274 411 - -
Phac9g02471 411 ProSiteProfiles SET domain profile. 277 399 IPR001214 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phac9g02471 Phac-Chr9 23405890 23409905 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Phac9g02471 43 125 C2H2 Transcription Factor Family AT3G01460 36.471 3.75e-08 53.9
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Phac9g02471 SET 4.2e-06 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Phac9g02471 K24406 - gmx:100785817 616.69