Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phac9g02466 ATGGTAAGAGCCAGAGACGATCTATGCATCAACGTTCCCACTTTCTTCAAGTGCCCTATTTCTCTTGATATTATGAAATCTCCTGTCAGCCTCTGCACCGGGGTCACCTACGACCGCTCCAGCATCCAACGCTGGCTCGACGCCGGCAACAACACCTGCCCCGCAACCATGCAACTCCTCCAAACAAAGGACTTCGTTCCCAACCGAACTTTACAAAGCCTCATTCAGATCTGGTCCGATTCCCTGCGCCACTCAACCGTTCCGCACCCCCTCCTCTCCCCAGACCAGCTCCTCCCAATCGTTGCTCAATTGGAAACTCACTCTCTCCGCTCCGCTTCGCTCGCCAAACTGCTCCACTTCGCCAGAGATTCTAACCATAACAAACTCTTCCTTGCCAAACTAGAAGGCTTCGTCAACCAACTGCTTCGTTTCCTCGACAATGTCGACGGAGGACTCGTCGCCAGTGCTAATACTCAATTTCTCCAACAAGTCGTCCAACTGCTAGGTCTGATTCTTGATAGCGTCGAAGATCGCGATGGATTGAGAAACTCTTTGCTCAAAGGAAACAAACAAAGCCTGGATTCTCTGCTTCTCGTTCTGCAACGAGGATGCTGCGAATCGAGAATCGCCTCCACTAGGGTTCTGCAATTCATCGCCGTGGACGCGGAGTCGAAGATTTTAATCGCGGAGAAGGAAGGCGTGGTGGCCGAGTTGCTGAAGTCGGCGGCGCCGGAGAAAGATCCGGCGCTGGTCGAGGCCGCGCTGGCGTGCCTGGTCGCGATTTCGACGCCGAAGCGGAACAAGCTGAAGCTGGTGAGTCTCGGCGCGGTGAAGGCGCTGTCGAGGCTGTTGGCGGAGGCGAAGCTGGGCGCGGCGGCGGTGGAGAAGGTGCTTAAGCTGGTGGAGACGGCGTCGTCGACGAGGGAGGGGCGGAAGGAGATATGCGAGGACGCAGCGTGCGTGGCGGCGGTGCTGAGCAAGGTTCTGAAGGTGTCTAGCGTGGCGACGGAGCATGCGGTGACGACGCTGTGGAGCGTGTGCTACCTGTTTCGCGATCGCAAGGCGCAGGAGGCAGTGACTCAGGCCAATGGCTTGACCAAGATTCTGCTGCTGATGCAGAGCAATTGTGCGCCGCAAGTGCGCCAAATGTGCACCGATTTGCTCAAGATTTTTCGGGTGAACTCCAAGTCATGCCTCTCCTGCTACGACACCAAGACCACGCATATCATGCCGTTTTGA 1239 0.5634 MVRARDDLCINVPTFFKCPISLDIMKSPVSLCTGVTYDRSSIQRWLDAGNNTCPATMQLLQTKDFVPNRTLQSLIQIWSDSLRHSTVPHPLLSPDQLLPIVAQLETHSLRSASLAKLLHFARDSNHNKLFLAKLEGFVNQLLRFLDNVDGGLVASANTQFLQQVVQLLGLILDSVEDRDGLRNSLLKGNKQSLDSLLLVLQRGCCESRIASTRVLQFIAVDAESKILIAEKEGVVAELLKSAAPEKDPALVEAALACLVAISTPKRNKLKLVSLGAVKALSRLLAEAKLGAAAVEKVLKLVETASSTREGRKEICEDAACVAAVLSKVLKVSSVATEHAVTTLWSVCYLFRDRKAQEAVTQANGLTKILLLMQSNCAPQVRQMCTDLLKIFRVNSKSCLSCYDTKTTHIMPF* 413
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phac9g02466 412 PANTHER WDSAM1 PROTEIN 11 400 IPR045185 GO:0061630
Phac9g02466 412 ProSiteProfiles U-box domain profile. 11 85 IPR003613 GO:0004842|GO:0016567
Phac9g02466 412 SMART Ubox_2 15 78 IPR003613 GO:0004842|GO:0016567
Phac9g02466 412 Pfam U-box domain 12 80 IPR003613 GO:0004842|GO:0016567
Phac9g02466 412 SUPERFAMILY RING/U-box 6 80 - -
Phac9g02466 412 CDD RING-Ubox_PUB 13 65 IPR045210 -
Phac9g02466 412 SUPERFAMILY ARM repeat 106 394 IPR016024 -
Phac9g02466 412 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 3 87 IPR013083 -
Phac9g02466 412 FunFam RING-type E3 ubiquitin transferase 4 84 - -
Phac9g02466 412 Gene3D - 100 401 IPR011989 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phac9g02466 Phac-Chr9 23319825 23321833 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Phac9g02466 5 412 U-box Gene Family AT5G64660 51.790 2.95e-148 425
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Phac9g02466 - - gmx:100801033 627.091