Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phac9g02454 ATGTATTCTGCTGCTACTTCCTTTACTTCACCACTCCACCATGACCTTCACAACTTCCACTCAAGAAGGTTACTCCTTCACTCCCCACTCAACCAATCAGCCAAGCCCCCAGCAAGCAGCCACGATTCCTCAGAAACATATCTTGGAGATGGAAATTTCGATGCAAATGTTGTCATGGTACTCTCAGTCCTACTATGTGCACTCATCTGCTCCTTAGGTTTGAACTCCATCATCAGGTGTGCACTAAGGTGTTCCAATTTCGTAGTGAGTGACTCGGTGGCAACCAACAGCCCTCCAGCAAGAGTTACCAACACAGGAGTGAAGAAGAAAGCCCTCAAGACTTTCCCCACAGTGAGTTACTCAGCTGAGCTGAATCTCCCAAGTTTGGACTCAGAGTGTGTGATATGTTTGTCAGAGTTCTCAAATGGTGACAAGGTGCGCATTTTGCCAAAGTGCAACCACGGGTTCCACGTACGCTGCATTGACATGTGGCTAAGCTCACACTCTTCATGCCCCAAATGCAGACAGTGCCTAATTGAGACTTGCCAAAAGATTGTTGGGTGCAGTCAGCAGCAAGCTAGCTCCTCTCAACAACCAGTGTTGCAGGTGCCAGAAACCATTGTCACCATAACGCCACTGGACCCAGAAGTTGCAGTGGAAATGGACCCTGGTCAGCCATAA 681 0.4846 MYSAATSFTSPLHHDLHNFHSRRLLLHSPLNQSAKPPASSHDSSETYLGDGNFDANVVMVLSVLLCALICSLGLNSIIRCALRCSNFVVSDSVATNSPPARVTNTGVKKKALKTFPTVSYSAELNLPSLDSECVICLSEFSNGDKVRILPKCNHGFHVRCIDMWLSSHSSCPKCRQCLIETCQKIVGCSQQQASSSQQPVLQVPETIVTITPLDPEVAVEMDPGQP* 227
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phac9g02454 226 CDD RING-H2_EL5-like 132 175 - -
Phac9g02454 226 ProSiteProfiles Zinc finger RING-type profile. 133 175 IPR001841 -
Phac9g02454 226 PANTHER RING-H2 FINGER PROTEIN ATL78 16 216 IPR044602 GO:0016567|GO:0016740
Phac9g02454 226 SMART ring_2 133 174 IPR001841 -
Phac9g02454 226 SUPERFAMILY RING/U-box 111 180 - -
Phac9g02454 226 FunFam RING-H2 finger protein ATL73 92 180 - -
Phac9g02454 226 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 94 179 IPR013083 -
Phac9g02454 226 Pfam Ring finger domain 132 175 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phac9g02454 Phac-Chr9 23258144 23258908 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Phac9g02454 23 179 C3H Transcription Factor Family AT3G10910 46.626 1.04e-44 146
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Phac9g02454 K19040 - gmx:100787934 369.777
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phac9g02454 9 23258144 23258908 Phac9g02454 9 23258144 23258908 ECH