Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phac9g02431 ATGGACTTTGACGAGTACGATTACTTGGAGAAGACAGTGGAGGAACAAGAGGACCGCGACTCAAGCAGGAAGAAGAAAGAGACTGAAAGGAGCTACAGAAAGCGCGACGGGATCGACGAGGGCTCAGAGGAGAGGAAGAACAAGAGGTCAAGGGGAGACGACGAGAATGGCTCCAAGAAGGATAGAGATCGCGAAGAGCGCGACAGGGAGCGCGACAGAAGTAGCAGGGATAGGGATAGGGATAGGGATAGAGATAGAGATAGAGACAGAGATGGCGAGAGAAGTAGCAGAGACAGGAACAGAGACAGAGATAGAGATAGAGATAGGGAAAAGGAGGGAGACAAGGAGAGGGATCGGAGGGACAGAGACAAAGAGAGGGAGAAGAGGGAGAAAGAGAGGGAAAGGGACAGAGATAGGGAAGGAGAAAGAGACCGAGATAGAGACCGAAGGGACAAAGAACGGGAAGAGAGAGAGAGGTCTCGGAGGAGCAGGAGTCGTTCTGAGCGAGAGAGAGAAAGAGATACCAGGGAACGGGATTTCGACACCAGAGATACCAGGAGATTTAGGGACAAGAAAGATGCAGTGGAGCCTGAGGCAGATCCAGAAAGGGACCAGAGGACTGTTTTTGCATACCAGATGCCCTTAAAGGCGTCAGAGAGGGATGTTTATGAATTCTTCTCAAAAGCTGGCAAGGTAAGGGATGTCCGTCTAATCATGGATAGGAACTCAAGACGATCTAAAGGAGTTGGGTACATTGAATTTTATGATGCAATGTCAGTGCCAATGGCAATTGCTCTCTCAGGCCAACTTCTTCTGGGACAACCTGTAATGGTCAAACCTTCTGAGGCTGAAAAGAACCTTGTCCAATCTAATGCTACCAGTGGAGCTGCTGGGGTAGTAGGACCATATGGAGCTGTGGACAGGAAACTGTATGTGGGGAACCTTCACTTCAATATGACAGAGAGTCAATTGAGAGAGATTTTTGAGCCATTTGGTCCAGTGGAGCTTGTGCAACTGCCTCTTGACTTGGAGACGGGACATTGCAAGGGCTTTGGGTTTGTTCAATTTGCCCATCTTGAGCATGCCAAGGCTGCTCAAAGTTTAAATGGAAAGCTTGAAATTGCTGGCAGGACTATAAAGGTTTCATCTGTAACAGATCATGTTGGAAACCAAGATACAACTGCAAAATCTGCAGACTTTGACGATGATGAAGGTGGATTGGCTTTAAATGCCCAATCAAGAGCATTGCTTATGCAAAAACTGGACCGCTCTGGCATTGCAGCAAGCATTGGTCTTCCTGTTGGGAATGGGTCAGCTCCTGCTCAACAGGCTATGATGCCTATTGGTAATCCAGGCGTAATACCAGCACCAACTGTCCCGACGCAAGTTGTGCCTACCCCAGTGATTGAACCTGTTGGAAACCCCAGTGAGTGTCTACTGTTGAAGAATATGTTTGATCCAAACACTGAGACAGAGCCAGATTTTGATCTAGACATTAAAGAGGATGTGGAAGAAGAGTGTTCCAAATATGGACGGGTGAAACATATTTATGTTGACAAAAGAAGTACAGGTTTTGTGTATTTGCAGTTTGAAACAGTTGAAGCAGCTAGTGCTGCTCAACGTGCAATGCACACAAGGTGGTTTGCAGGAAGAATGATTTCTGCTATCTATATGCAACCTCAGATTTACGAAGCCAAGTTTAAAGGGGACGCTTGA 1716 0.4709 MDFDEYDYLEKTVEEQEDRDSSRKKKETERSYRKRDGIDEGSEERKNKRSRGDDENGSKKDRDREERDRERDRSSRDRDRDRDRDRDRDRDGERSSRDRNRDRDRDRDREKEGDKERDRRDRDKEREKREKERERDRDREGERDRDRDRRDKEREERERSRRSRSRSERERERDTRERDFDTRDTRRFRDKKDAVEPEADPERDQRTVFAYQMPLKASERDVYEFFSKAGKVRDVRLIMDRNSRRSKGVGYIEFYDAMSVPMAIALSGQLLLGQPVMVKPSEAEKNLVQSNATSGAAGVVGPYGAVDRKLYVGNLHFNMTESQLREIFEPFGPVELVQLPLDLETGHCKGFGFVQFAHLEHAKAAQSLNGKLEIAGRTIKVSSVTDHVGNQDTTAKSADFDDDEGGLALNAQSRALLMQKLDRSGIAASIGLPVGNGSAPAQQAMMPIGNPGVIPAPTVPTQVVPTPVIEPVGNPSECLLLKNMFDPNTETEPDFDLDIKEDVEEECSKYGRVKHIYVDKRSTGFVYLQFETVEAASAAQRAMHTRWFAGRMISAIYMQPQIYEAKFKGDA* 572
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phac9g02431 571 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 206 283 IPR000504 GO:0003723
Phac9g02431 571 MobiDBLite consensus disorder prediction 12 205 - -
Phac9g02431 571 NCBIfam splicing factor, CC1-like family 96 567 IPR006509 GO:0003723|GO:0005634|GO:0006397
Phac9g02431 571 CDD RRM3_RBM39_like 476 558 - -
Phac9g02431 571 SMART rrm1_1 309 382 IPR000504 GO:0003723
Phac9g02431 571 SMART rrm1_1 478 556 IPR000504 GO:0003723
Phac9g02431 571 SMART rrm1_1 207 279 IPR000504 GO:0003723
Phac9g02431 571 Gene3D - 304 400 IPR012677 -
Phac9g02431 571 PANTHER SPLICING FACTOR (PAD-1), PUTATIVE (AFU_ORTHOLOGUE AFUA_1G15810)-RELATED 1 567 IPR006509 GO:0003723|GO:0005634|GO:0006397
Phac9g02431 571 Gene3D - 473 570 IPR012677 -
Phac9g02431 571 FunFam Splicing factor, CC1-like protein 472 571 - -
Phac9g02431 571 Coils Coil 115 135 - -
Phac9g02431 571 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 308 386 IPR000504 GO:0003723
Phac9g02431 571 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 482 560 IPR000504 GO:0003723
Phac9g02431 571 Gene3D - 134 293 IPR012677 -
Phac9g02431 571 CDD RRM2_RBM23_RBM39 310 387 - -
Phac9g02431 571 MobiDBLite consensus disorder prediction 1 205 - -
Phac9g02431 571 FunFam Splicing factor CC1-like 292 397 - -
Phac9g02431 571 SUPERFAMILY RNA-binding domain, RBD 307 385 IPR035979 GO:0003676
Phac9g02431 571 CDD RRM1_RBM39_like 207 279 - -
Phac9g02431 571 FunFam Splicing factor CC1-like 129 291 - -
Phac9g02431 571 Coils Coil 150 170 - -
Phac9g02431 571 Pfam linker between RRM2 and RRM3 domains in RBM39 protein 401 495 IPR029123 -
Phac9g02431 571 SUPERFAMILY RNA-binding domain, RBD 474 559 IPR035979 GO:0003676
Phac9g02431 571 SUPERFAMILY RNA-binding domain, RBD 199 287 IPR035979 GO:0003676
Phac9g02431 571 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 214 275 IPR000504 GO:0003723
Phac9g02431 571 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 500 553 IPR000504 GO:0003723
Phac9g02431 571 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 310 380 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phac9g02431 Phac-Chr9 23043859 23050912 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Phac9g02431 280 381 Eukaryotic Initiation Factors Gene Family AT4G34110 35.922 1.28e-07 52.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Phac9g02431 K13091 - gmx:100802446 713.761
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phac9g02431 9 23043859 23050912 Phac9g02431 9 23043859 23050912 ECH