Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phac9g02430 ATGGACTTTGACGAGTACGATTACTTGGAGAAGACAGTGGAGGAACAAGAGGACCGCGACTCAAGCAGGAAGAAGAAAGAGACTGAAAGGAGCTACAGAAAGCGCGACGGGATCGACGAGGGCTCAGAGGAGAGGAAGAACAAGAGGTCAAGGGGAGACGACGAGAATGGCTCCAAGAAGGATAGAGATCGCGAAGAGCGCGACAGGGAGCGCGACAGAAGTAGCAGGGATAGGGATAGGGATAGGGATAGAGATAGAGATAGAGACAGAGATGGCGAGAGAAGTAGCAGAGACAGGAACAGAGACAGAGATAGAGATAGAGATAGGGAAAAGGAGGGAGACAAGGAGAGGGATCGGAGGGACAGAGACAAAGAGAGGGAGAAGAGGGAGAAAGAGAGGGAAAGGGACAGAGATAGGGAAGGAGAAAGAGACCGAGATAGAGACCGAAGGGACAAAGAACGGGAAGAGAGAGAGAGGTCTCGGAGGAGCAGGAGTCGTTCTGAGCGAGAGAGAGAAAGAGATACCAGGGAACGGGATTTCGACACCAGAGATACCAGGAGATTTAGGGACAAGAAAGATGCAGTGGAGCCTGAGGCAGATCCAGAAAGGGACCAGAGGACTGTTTTTGCATACCAGATGCCCTTAAAGGCGTCAGAGAGGGATGTTTATGAATTCTTCTCAAAAGCTGGCAAGGTAAGGGATGTCCGTCTAATCATGGATAGGAACTCAAGACGATCTAAAGGAGTTGGGTACATTGAATTTTATGATGCAATGTCAGTGCCAATGGCAATTGCTCTCTCAGGCCAACTTCTTCTGGGACAACCTGTAATGGTCAAACCTTCTGAGGCTGAAAAGAACCTTGTCCAATCTAATGCTACCAGTGGAGCTGCTGGGGTAGTAGGACCATATGGAGCTGTGGACAGGAAACTGTATGTGGGGAACCTTCACTTCAATATGACAGAGAGTCAATTGAGAGAGATTTTTGAGCCATTTGGTCCAGTGGAGCTTGTGCAACTGCCTCTTGACTTGGAGACGGGACATTGCAAGGGCTTTGGGTTTGTTCAATTTGCCCATCTTGAGCATGCCAAGGCTGCTCAAAGTTTAAATGGAAAGCTTGAAATTGCTGGCAGGACTATAAAGGTTTCATCTGTAACAGATCATGTTGGAAACCAAGATACAACTGCAAAATCTGCAGACTTTGACGATGATGAAGGTGGATTGGCTTTAAATGCCCAATCAAGAGCATTGCTTATGCAAAAACTGGACCGCTCTGGCATTGCAGCAAGCATTGGTCTTCCTGTTGGGAATGGGTCAGCTCCTGCTCAACAGGCTATGATGCCTATTGGTAATCCAGGCGTAATACCAGCACCAACTGTCCCGACGCAAGTTGTGCCTACCCCAGTGATTGAACCTGTTGGAAACCCCAGTGAGTGTCTACTGTTGAAGAATATGTTTGATCCAAACACTGAGACAGAGCCAGATTTTGATCTAGACATTAAAGAGGATGTGGAAGAAGAGTGTTCCAAATATGGACGGGTGAAACATATTTATGTTGACAAAAGAAGTACAGGTTTTGTGTATTTGCAGTTTGAAACAGTTGAAGCAGCTAGTGCTGCTCAACGTGCAATGCACACAAGGTGGTTTGCAGGAAGAATGATTTCTGCTATCTATATGGTATTCATCTATTCACTTTGTCTTGAATTACCTGCTGACTTTGTTTCTTCAGATGTACAATTTTAA 1740 0.4649 MDFDEYDYLEKTVEEQEDRDSSRKKKETERSYRKRDGIDEGSEERKNKRSRGDDENGSKKDRDREERDRERDRSSRDRDRDRDRDRDRDRDGERSSRDRNRDRDRDRDREKEGDKERDRRDRDKEREKREKERERDRDREGERDRDRDRRDKEREERERSRRSRSRSERERERDTRERDFDTRDTRRFRDKKDAVEPEADPERDQRTVFAYQMPLKASERDVYEFFSKAGKVRDVRLIMDRNSRRSKGVGYIEFYDAMSVPMAIALSGQLLLGQPVMVKPSEAEKNLVQSNATSGAAGVVGPYGAVDRKLYVGNLHFNMTESQLREIFEPFGPVELVQLPLDLETGHCKGFGFVQFAHLEHAKAAQSLNGKLEIAGRTIKVSSVTDHVGNQDTTAKSADFDDDEGGLALNAQSRALLMQKLDRSGIAASIGLPVGNGSAPAQQAMMPIGNPGVIPAPTVPTQVVPTPVIEPVGNPSECLLLKNMFDPNTETEPDFDLDIKEDVEEECSKYGRVKHIYVDKRSTGFVYLQFETVEAASAAQRAMHTRWFAGRMISAIYMVFIYSLCLELPADFVSSDVQF* 580
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phac9g02430 579 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 206 283 IPR000504 GO:0003723
Phac9g02430 579 MobiDBLite consensus disorder prediction 12 205 - -
Phac9g02430 579 FunFam HIV Tat-specific factor 1 homolog 476 558 - -
Phac9g02430 579 NCBIfam splicing factor, CC1-like family 80 559 IPR006509 GO:0003723|GO:0005634|GO:0006397
Phac9g02430 579 SUPERFAMILY RNA-binding domain, RBD 307 385 IPR035979 GO:0003676
Phac9g02430 579 Gene3D - 304 400 IPR012677 -
Phac9g02430 579 CDD RRM3_RBM39_like 476 558 - -
Phac9g02430 579 SMART rrm1_1 478 556 IPR000504 GO:0003723
Phac9g02430 579 SMART rrm1_1 309 382 IPR000504 GO:0003723
Phac9g02430 579 SMART rrm1_1 207 279 IPR000504 GO:0003723
Phac9g02430 579 FunFam Splicing factor CC1-like 129 291 - -
Phac9g02430 579 FunFam Splicing factor CC1-like 292 397 - -
Phac9g02430 579 Pfam linker between RRM2 and RRM3 domains in RBM39 protein 401 495 IPR029123 -
Phac9g02430 579 SUPERFAMILY RNA-binding domain, RBD 474 557 IPR035979 GO:0003676
Phac9g02430 579 PANTHER SPLICING FACTOR (PAD-1), PUTATIVE (AFU_ORTHOLOGUE AFUA_1G15810)-RELATED 1 559 IPR006509 GO:0003723|GO:0005634|GO:0006397
Phac9g02430 579 Coils Coil 115 135 - -
Phac9g02430 579 Gene3D - 473 562 IPR012677 -
Phac9g02430 579 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 308 386 IPR000504 GO:0003723
Phac9g02430 579 CDD RRM2_RBM23_RBM39 310 387 - -
Phac9g02430 579 MobiDBLite consensus disorder prediction 1 205 - -
Phac9g02430 579 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 310 380 IPR000504 GO:0003723
Phac9g02430 579 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 500 553 IPR000504 GO:0003723
Phac9g02430 579 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 214 275 IPR000504 GO:0003723
Phac9g02430 579 CDD RRM1_RBM39_like 207 279 - -
Phac9g02430 579 Gene3D - 135 291 IPR012677 -
Phac9g02430 579 Coils Coil 150 170 - -
Phac9g02430 579 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 482 553 IPR000504 GO:0003723
Phac9g02430 579 SUPERFAMILY RNA-binding domain, RBD 199 287 IPR035979 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phac9g02430 Phac-Chr9 23043859 23050912 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Phac9g02430 280 381 Eukaryotic Initiation Factors Gene Family AT4G34110 35.922 1.33e-07 52.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Phac9g02430 K13091 - gmx:100802446 692.96