Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phac9g02429 ATGGACTTTGACGAGTACGATTACTTGGAGAAGACAGTGGAGGAACAAGAGGACCGCGACTCAAGCAGGAAGAAGAAAGAGACTGAAAGGAGCTACAGAAAGCGCGACGGGATCGACGAGGGCTCAGAGGAGAGGAAGAACAAGAGGTCAAGGGGAGACGACGAGAATGGCTCCAAGAAGGATAGAGATCGCGAAGAGCGCGACAGGGAGCGCGACAGAAGTAGCAGGGATAGGGATAGGGATAGGGATAGAGATAGAGATAGAGACAGAGATGGCGAGAGAAGTAGCAGAGACAGGAACAGAGACAGAGATAGAGATAGAGATAGGGAAAAGGAGGGAGACAAGGAGAGGGATCGGAGGGACAGAGACAAAGAGAGGGAGAAGAGGGAGAAAGAGAGGGAAAGGGACAGAGATAGGGAAGGAGAAAGAGACCGAGATAGAGACCGAAGGGACAAAGAACGGGAAGAGAGAGAGAGGTCTCGGAGGAGCAGGAGTCGTTCTGAGCGAGAGAGAGAAAGAGATACCAGGGAACGGGATTTCGACACCAGAGATACCAGGAGATTTAGGGACAAGAAAGATGCAGTGGAGCCTGAGGCAGATCCAGAAAGGGACCAGAGGACTGTTTTTGCATACCAGATGCCCTTAAAGGCGTCAGAGAGGGATGTTTATGAATTCTTCTCAAAAGCTGGCAAGGTAAGGGATGTCCGTCTAATCATGGATAGGAACTCAAGACGATCTAAAGGAGTTGGGTACATTGAATTTTATGATGCAATGTCAGTGCCAATGGCAATTGCTCTCTCAGGCCAACTTCTTCTGGGACAACCTGTAATGGTCAAACCTTCTGAGGCTGAAAAGAACCTTGTCCAATCTAATGCTACCAGTGGAGCTGCTGGGGTAGTAGGACCATATGGAGCTGTGGACAGGAAACTGTATGTGGGGAACCTTCACTTCAATATGACAGAGAGTCAATTGAGAGAGATTTTTGAGCCATTTGGTCCAGTGGAGCTTGTGCAACTGCCTCTTGACTTGGAGACGGGACATTGCAAGGGCTTTGGGTTTGTTCAATTTGCCCATCTTGAGCATGCCAAGGCTGCTCAAAGTTTAAATGGAAAGCTTGAAATTGCTGGCAGGACTATAAAGGTTTCATCTGTAACAGATCATGTTGGAAACCAAGATACAACTGCAAAATCTGCAGACTTTGACGATGATGAAGGTGGATTGTTTGTTTGGCTCGATTGA 1239 0.481 MDFDEYDYLEKTVEEQEDRDSSRKKKETERSYRKRDGIDEGSEERKNKRSRGDDENGSKKDRDREERDRERDRSSRDRDRDRDRDRDRDRDGERSSRDRNRDRDRDRDREKEGDKERDRRDRDKEREKREKERERDRDREGERDRDRDRRDKEREERERSRRSRSRSERERERDTRERDFDTRDTRRFRDKKDAVEPEADPERDQRTVFAYQMPLKASERDVYEFFSKAGKVRDVRLIMDRNSRRSKGVGYIEFYDAMSVPMAIALSGQLLLGQPVMVKPSEAEKNLVQSNATSGAAGVVGPYGAVDRKLYVGNLHFNMTESQLREIFEPFGPVELVQLPLDLETGHCKGFGFVQFAHLEHAKAAQSLNGKLEIAGRTIKVSSVTDHVGNQDTTAKSADFDDDEGGLFVWLD* 413
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phac9g02429 412 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 206 283 IPR000504 GO:0003723
Phac9g02429 412 MobiDBLite consensus disorder prediction 12 205 - -
Phac9g02429 412 PANTHER SPLICING FACTOR (PAD-1), PUTATIVE (AFU_ORTHOLOGUE AFUA_1G15810)-RELATED 1 406 IPR006509 GO:0003723|GO:0005634|GO:0006397
Phac9g02429 412 SUPERFAMILY RNA-binding domain, RBD 307 385 IPR035979 GO:0003676
Phac9g02429 412 SMART rrm1_1 309 382 IPR000504 GO:0003723
Phac9g02429 412 SMART rrm1_1 207 279 IPR000504 GO:0003723
Phac9g02429 412 NCBIfam splicing factor, CC1-like family 96 405 IPR006509 GO:0003723|GO:0005634|GO:0006397
Phac9g02429 412 SUPERFAMILY RNA-binding domain, RBD 199 287 IPR035979 GO:0003676
Phac9g02429 412 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 310 380 IPR000504 GO:0003723
Phac9g02429 412 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 214 275 IPR000504 GO:0003723
Phac9g02429 412 Gene3D - 134 293 IPR012677 -
Phac9g02429 412 Coils Coil 115 135 - -
Phac9g02429 412 FunFam Splicing factor CC1-like 129 291 - -
Phac9g02429 412 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 308 386 IPR000504 GO:0003723
Phac9g02429 412 FunFam Splicing factor CC1-like 292 397 - -
Phac9g02429 412 MobiDBLite consensus disorder prediction 1 205 - -
Phac9g02429 412 CDD RRM1_RBM39_like 207 279 - -
Phac9g02429 412 Coils Coil 150 170 - -
Phac9g02429 412 Gene3D - 304 400 IPR012677 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phac9g02429 Phac-Chr9 23043859 23050912 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Phac9g02429 280 381 Eukaryotic Initiation Factors Gene Family AT4G34110 35.922 1.31e-07 52.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Phac9g02429 K13091 - gmx:100802446 431.795