Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Phac9g02422 | ATGGGTACTGGTTGGAGGAGAGCCTTCTGCACCCGAGACCCCGCTTCTACCATATCGGATAAACACCCCGCAAGCCCAGGCCCAGGCCCCAGCCCAAGAAGCTGCGCTCGCTTGGGTTTTCTCTCCGGAGGAAGCAACCCTTCCACCCCACGCTTGCGGTGCACTACAATACCAGAATCTGCTTCTCAAACAGTAAGCGTAAACGAGAGCCCCAGGGTTGAAAGCAAGAACACCCCCAGAGCAACCAAGTCTCCGAAAACGGTGTCGCTCTCAAATCCATCTTCACCGCGTTCTCCTCTCAAGCTCTCCCTCTTCAAGAACAGTTTCAAATTCAGGAGTAGCTGTGGAATTTGCTTGAACAGCGTGAAGACGGGACAGGGTACGGCTATTTACACTGCGGAATGCGGTCACGCGTTTCATTTCCCGTGTATCGCAGCGCATGTACGCAAACATGGTAGCCTGGTGTGCCCCGTCTGCAACGCCACGTGGAAAGACGTCCCACTCCTCGCGGCGCACAAGAACCTCGCTGCAATATCCGCCACGCAAAACGACGTCGCCCAAAGGATCACCCAAAACCCCAATGCCAACGTCAAAAAGACAACAGAACACACATCCCCCGTTTTCAAGACCTACAACCACGTGGAGCCCCCACCCAAGCATTCAGATTCGATTCGGTCCTACGACGACGACGAGCCACTCCACTCTCCCACCTCAGGCGGAAGGATCATTCCTATTCCCGAAGCCGACGAGAATGCGGAAGAAGACGACGAAGAAGATGCCGGCGAGTTCCAAGGCTTTTTCGTCAATACCAAGAATTCCTCCTCAAAGTCATACTCTGATTCCTTCCAAACAACTGAAGGAGATTCCAGAACTGTTCAGGTGAAACTCATGCCAGAGTGCGCCGTTATCTCGGCTTCGCGAACGCACGAGACCTACGCTTTGGTGTTGAAAGTCAAGGCTCCACCGCCGCCGCCTGCACCACGGAGCAGCGCCGCGCCATCTCAGCGTGCGCCGATAGATCTCGTCACCGTCCTGGACGTTGGTGGAAGCATGACCGGCGCGAAGCTGCATATGCTAAAGCGCGCGATGCGTTTAGTTATCTCATCGCTTGGCCCCGCTGACAGGCTCTCGATCGTTGCTTTCTCCGGAACATCGAAACGGCTCTTACCGCTGCGCATAATGACGGCTCAAGGTCAGCGCGTGGCTAGACGCATAGTTGACCGGCTCGTGGTCGGTCAAGGCTCGAGCGTAGGCGACGCATTGAGGAAAGCGACGAGAGTGTTAGAGGATCGCAGAGAGAGAAATCCGGTGGCGAGCGTTATGCTGTTATCGGACGGTCAAGAAGAGAGAGTTCAGAATCAGAGGGGTAACAGTAGTGGCAGTCAGAGGAAGTCGTCGACCCACATGACGTCGACGCGGTTCGCGCATATCGAGATTCCGGTTCACGCTTTCGGGTTCGGGGCGAAAAGTGGTTACAGCCAGGAACCGGGGGAGGAGGCGTTCGCGAAGTGCGTGGGTGGGCTTCTGAGCGTGGTGGTACAGGATTTGAGGATTCAAGTGGGGTTTGAATCAGAGGCAGTCGAGATGAGCGCGATTTACTCGTGCAGTGGAAGGCCCAGTCTTCTGAGCTCGGGGGCGGTGCGGCTGGGGGACTTGTACGCCGAGGAAGAGAGAGAGCTGTTGGTGGAATTGAGAGTTCCCGCGTCGTCAGGACCTGGGACCCACCACGTGATGGCTGTACGGTGCCTTTACAAGGACCCTGCTAGCCAGGAGATCATATACGGTAGGGAGCAGGGTCTTCTGGTCCCGCCGCCTCAGAGCCTGCGTTGTTCCGGTACAAGGATCCAGAGGCTCAGGAATCTCTTCATAACCACCCGAGCCATTGCAGAGTCCAAGAGGCTTCTTGAGCACAACGCTGACTTCACCAGTGCGCATCATTTGCTTGCCTCCGCCCGTGCACTTCTCATGCACTCTAACGCCGCTTCGGCTGAAGACTACGTGCGCGCCTTGGAGGCTGAGCTGGCAGAGCTTCACTGGCGGAGGCAGCACGAGCAGGTTCAGCAGCAGCAGATTGTGCAGCAGCGGAGAAGAGGGAGTGAGAGAGAGATGACTTTGGTGGACGAGAATGGCGAGCCGCTTACCCCCACGTCGGCTTGGAGAGCCGCCGAGAAGCTGGCTAAGATGGCGATGATGAAGAAGTCTTTGAACAGAGTCAGCGACTTGCACGGCTTCGAAAACGCTAGGTTTTAA | 2250 | 0.5644 | MGTGWRRAFCTRDPASTISDKHPASPGPGPSPRSCARLGFLSGGSNPSTPRLRCTTIPESASQTVSVNESPRVESKNTPRATKSPKTVSLSNPSSPRSPLKLSLFKNSFKFRSSCGICLNSVKTGQGTAIYTAECGHAFHFPCIAAHVRKHGSLVCPVCNATWKDVPLLAAHKNLAAISATQNDVAQRITQNPNANVKKTTEHTSPVFKTYNHVEPPPKHSDSIRSYDDDEPLHSPTSGGRIIPIPEADENAEEDDEEDAGEFQGFFVNTKNSSSKSYSDSFQTTEGDSRTVQVKLMPECAVISASRTHETYALVLKVKAPPPPPAPRSSAAPSQRAPIDLVTVLDVGGSMTGAKLHMLKRAMRLVISSLGPADRLSIVAFSGTSKRLLPLRIMTAQGQRVARRIVDRLVVGQGSSVGDALRKATRVLEDRRERNPVASVMLLSDGQEERVQNQRGNSSGSQRKSSTHMTSTRFAHIEIPVHAFGFGAKSGYSQEPGEEAFAKCVGGLLSVVVQDLRIQVGFESEAVEMSAIYSCSGRPSLLSSGAVRLGDLYAEEERELLVELRVPASSGPGTHHVMAVRCLYKDPASQEIIYGREQGLLVPPPQSLRCSGTRIQRLRNLFITTRAIAESKRLLEHNADFTSAHHLLASARALLMHSNAASAEDYVRALEAELAELHWRRQHEQVQQQQIVQQRRRGSEREMTLVDENGEPLTPTSAWRAAEKLAKMAMMKKSLNRVSDLHGFENARF* | 750 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Phac9g02422 | 749 | ProSiteProfiles | Zinc finger RING-type profile. | 115 | 160 | IPR001841 | - | |
| Phac9g02422 | 749 | MobiDBLite | consensus disorder prediction | 439 | 470 | - | - | |
| Phac9g02422 | 749 | SUPERFAMILY | RING/U-box | 109 | 165 | - | - | |
| Phac9g02422 | 749 | ProSiteProfiles | VWFA domain profile. | 340 | 487 | IPR002035 | - | |
| Phac9g02422 | 749 | SMART | ring_2 | 115 | 159 | IPR001841 | - | |
| Phac9g02422 | 749 | MobiDBLite | consensus disorder prediction | 215 | 235 | - | - | |
| Phac9g02422 | 749 | MobiDBLite | consensus disorder prediction | 209 | 245 | - | - | |
| Phac9g02422 | 749 | CDD | RING-H2_WAVH2 | 112 | 165 | - | - | |
| Phac9g02422 | 749 | Gene3D | von Willebrand factor, type A domain | 340 | 512 | IPR036465 | - | |
| Phac9g02422 | 749 | MobiDBLite | consensus disorder prediction | 446 | 470 | - | - | |
| Phac9g02422 | 749 | SMART | VWA_4 | 338 | 528 | IPR002035 | - | |
| Phac9g02422 | 749 | Pfam | von Willebrand factor type A domain | 341 | 447 | IPR002035 | - | |
| Phac9g02422 | 749 | MobiDBLite | consensus disorder prediction | 1 | 97 | - | - | |
| Phac9g02422 | 749 | Pfam | RING-like zinc finger | 115 | 144 | IPR001841 | - | |
| Phac9g02422 | 749 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 110 | 223 | IPR013083 | - | |
| Phac9g02422 | 749 | MobiDBLite | consensus disorder prediction | 41 | 97 | - | - | |
| Phac9g02422 | 749 | SUPERFAMILY | vWA-like | 338 | 517 | IPR036465 | - | |
| Phac9g02422 | 749 | CDD | vWA_C3HC4_type | 339 | 513 | - | - | |
| Phac9g02422 | 749 | PANTHER | CALCIUM-ACTIVATED CHLORIDE CHANNEL REGULATOR | 113 | 744 | - | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Phac9g02422 | Phac-Chr9 | 22977474 | 22980949 | Dispersed/Wgd |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Phac9g02422 | 115 | 165 | C3H Transcription Factor Family | AT1G74410 | 41.176 | 8.66e-06 | 45.8 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Phac9g02422 | - | - | gmx:100782780 | 1156.35 |