Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phac9g02420 ATGTCTCCACCATTACTGGGCATAGGGGAGGAGGAGGGTAAAAGCAATGTCACTTTGTTGGTTTCCTCATCAACCACCATGGAAAGTGTGTGCCTCAAGACCTTAGAATTAAAAGAACGCAACTACATGGGCTTATCTGATTGTTCTTCTGTGGACAGCTCAGTTCCGTCCTTCTCAGAAGAGACTAAAAGTAATCTGAACCTGAAAGCCACTGAGCTCACGCTTGGGCTTCCGGGATCACAGTCCTCTGAAAGAGATTCCGATCTTTGCTTAAGAAGCTCAACTCAATTTGATGAAAAAGCCTTGTTTCCTTTGTGTCCTCTGGCTGATGATCACCACTCTTCAACCAAGACTGCTGTTTTGGGAAACAAGAGAGGATTTTCAGATGCCATGAATGGCTTCTCAGAGGGGAAGTTCTTGGTTGATTCGGAGGCCAATCCGATACTATCTCCCAGGCCCGCTTCGAACTTGGGACTAAATCCTGGTTCTACACTTGAGAAGGCTGGGGCTCTGCAAAACAAAATGAAAGAAGCAGCAACAACAAAGATGGGGCTCGATAGGCCTCATTCAGCCAATGAAACTAGACCAAGTATTCATTGTTCTGCTAATAATAACAACAGTGCACCGGCTACCAAGGCTCAGGTTGTGGGGTGGCCTCCTATAAGATCATTCAGGAAGAATTCATTGGCAACTAATTCAAAGAACAATGAAGAAGTTGATGGAAAAGTGGGGGTCGGTGCACTGTTCGTCAAAGTCAGTATGGATGGGGCTCCCTATTTAAGGAAAGTAGACTTGAATAATTACTCCACATATCCAGAATTATCTTCTGCTCTAGAGAAGATGTTCAGCTGTTTTACTATAAGTCAATGTGGATCTCATGGAATTCTGGGCAGGGAAATGCTGAATGAAACCAAGCTGAAGGACCTTCTTCATGGATCAGAATATGTTCTTACATATGAGGACAAAGATGGCGATTGGATGCTTGTGGGTGATGTTCCCTGGGAGATGTTTATTGAAACTTGCAAGAGGCTGAGGATCATGAAGAGTTCTGATGCCATTGGTCTAGCTCCCAGGGCTGTTGAAAAAAGTAAGAGCAGGACCTAG 1104 0.4457 MSPPLLGIGEEEGKSNVTLLVSSSTTMESVCLKTLELKERNYMGLSDCSSVDSSVPSFSEETKSNLNLKATELTLGLPGSQSSERDSDLCLRSSTQFDEKALFPLCPLADDHHSSTKTAVLGNKRGFSDAMNGFSEGKFLVDSEANPILSPRPASNLGLNPGSTLEKAGALQNKMKEAATTKMGLDRPHSANETRPSIHCSANNNNSAPATKAQVVGWPPIRSFRKNSLATNSKNNEEVDGKVGVGALFVKVSMDGAPYLRKVDLNNYSTYPELSSALEKMFSCFTISQCGSHGILGREMLNETKLKDLLHGSEYVLTYEDKDGDWMLVGDVPWEMFIETCKRLRIMKSSDAIGLAPRAVEKSKSRT* 368
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phac9g02420 367 ProSiteProfiles PB1 domain profile. 247 349 IPR000270 GO:0005515
Phac9g02420 367 FunFam Auxin-responsive protein 242 359 - -
Phac9g02420 367 PANTHER AUXIN-RESPONSIVE PROTEIN IAA17 66 354 IPR003311 GO:0005634|GO:0006355
Phac9g02420 367 Gene3D - 242 361 - -
Phac9g02420 367 Pfam AUX/IAA family 71 358 IPR033389 -
Phac9g02420 367 SUPERFAMILY CAD & PB1 domains 246 348 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phac9g02420 Phac-Chr9 22949585 22955454 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Phac9g02420 168 352 B3 DNA Binding Superfamily AT2G46530 28.646 2.42e-08 53.9
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR AUX/IAA Phac9g02420 AUX_IAA 2.3e-91 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Phac9g02420 K14484 - gmx:100783314 596.66