Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phac9g02398 ATGTCCGGCCCAGGGGTACGGTTGCACATCCAAGATCACCATGGTCTGGAGACCCCGAGCATCATCGTTGGTGTTCACTTTAGTCTAGCCCACCGCAGCGAAGTCCAATACACTTGCACAGGAACAGAGACCTTACCATGTGCTAATGCTAAAAAACTTCAAGTGGTGATGGATAATGGCATAGTCCAGGTTACGTTATCAAATCCAGGTGGGATTGTCACTGGGATACGATATAATGGTGTTGACAATTTGCTGGAAGTTCTCAACAAGGAGTCTAATAGAGGGTATTGGGACCTCGTTTGGAGTGCGCCAGGAAGCAAAGGGATCTTTGATGTGATTCAAGGAACGTGTTTTAAAGTTATAGTTCAAAATGAGGAACAGGTGGAGCTTTCTTTCACAAGAATGTGGGATCCTTCTCTAGAGGGAAAATTTGTCCCCTTAAATATTGACAAAAGATTTATAATGCTCCGTGGTTCATCAGGCTTCTACTCTTACGGAATTTATGAACACTTAAATGGATGGCCAGATTTTGATCTCAGTGAAACAAGGATTACTTTCAAGCTAAGAAAAGACAAGTTTCAATACATGGCTATGGCAGACAATAGACGAAGGATTCTTCCTTATCCAGAAGATCGGTTACCAGGAAGATGCCAAACCTTGGGCTATGCAGAAGCTGTCCTACTAACCAACCCCAAAGACCCACAATTGCAAGGAGAGGTGGATGACAAGTATCAGTATTCATGTGCAAACATGGATAATCGAGTCCATGGGTGGATATCTTTCAATCCACCAGTTGGATTCTGGCAGATCACACCTAGTGATGAATTTCGTTCCGGTGGACCCCTTAAACAGAATTTGACCTCACACGTAGGCCCCACCACACTTGCAATGTTTCTTAGTGCTCACTATGCGGGACAAGATTTGGTGCCTAAAATTAGAGGTGGTGAATCATGGAAGAAGGTTTTCGGTCCTGTATATATTTATCTCAATTCTGCAGCAGTAGGTGATGACCCACTTTGGTTATGGGAGGATGCAAAAATACAGATGATGAATGAAGTTCAAAGTTGGCCATATTATTTCCCAGCTTCAGAGGATTTTTTAAAATCGGATCAACGGGGCAACATCAGTGGCAGATTACTTGTCTTAGACAAGTACATCTGCACAGACTTAATATCAGCAAATGGTGCTTATGTTGGCCTGGCCCCACCTGGAGATGCAGGGTCATGGCAAAGAGAATGCAAGGACTATCAATTCTGGACCAGAGCAGATGAGAATGGATTTTTTACTATTAGAAACGTACGTCCAGGCGACTATAACCTTTTTGCTTGGGTGCCTGGCTTTGTTGGGGACTACAAATTTGTAGATTTCATGAAGATAACGCCAGGTTCTTACACTGAATTAGGTGAACTTGTATATGAGCCTCCAAGAGATGGTCCCACATTGTGGGAAATAGGTATTCCTGATAGATCCGCTGCAGAATTTTATGCTCCTGATCCCAATCCCCAATATATTAATAGGCTTTTTATCAACCACCCAGACAGGTTCAGGCAGTATGGATTGTGGGACAGGTATACAGAATTGTATCCTGATGCAGATTTGGTTTACACAGTTGGTGTTAATGACTATAGGAAGGACTGGTTTTATGCGCAGGCTCCGAGGAAAAAAGAGGATAACACTCTCCAAGGGACAACTTGGCAAATCAAGTTCGAACTCAGTGGCGTGGTTCAGGGAAGTACATACAAACTGAGAGTTGCAATTGCATCTGCAACCTTAGCTGAATTGCAGATTAGAGTAAATGATCCCAATGCTGGGCGACCCTTATTTACCAGTGGATTAATAGGAAGGGACAACTCAATTGCAAGACTTGGAATTCATGGAATCTATTGGCTTTACAATGTGAGTATACCAGGTTCTCTTCTTGTCGATGGCACAAATACCATATATTTTACGCAACCAAGATGCACCAGTCCCTTCCAAGAGTGGCTGCAAGCAACATCAGATGGTGATAGCCACCAAGAGGTGGTGATGGAAAATGGCATACTAAAAGTCACCTTATCAAATCCTGGGGGAATTGTGACTGGAATACAGTATAATAACATCGACAACTTGCTTGAAGTTTTGAATGACGAATCTAACAGAGGGTATTGGGACCTTGTTTGGAGCTCACCGACAAGTACATCAACCAGTGGTACATTTGATGTCATCAAAGGAACAAAATTCCAAGTTATGGTTGAAAATGAGGACCAAGTTGAGTTATCCTTCACCAGGACATGGGACATCTCTCTGGAGGGCAAGTTGGTTCCTTTAAATATTGACAAAAGGTTCATAATGCTTCGTGGTTGTTCGGGCTTCTACTCCTATGCAATTTATGAGCACTTAGAGGAGTGGCCTGCTTTCAATCTTAACGAAACAAGAATTGCTTTCAAGCTTAGAAAAGACAAGTTCCATTATATGGCGATGGCTGATAATAGACAAAGAAACATGCCTCTTCCAGATGACAGATTACCACCTAAGGGCAAAGCCCTTGCCTACCCAGAAGCAGTTCTACTTCTCAATCCCATCCAACCAGAACTTAAGGGAGAGGTGGATGACAAGTACCAATATTCATGCGACAACAAGGACAACAAAGTTCATGGATGGATCTGCATGGATCCTGCAGTGGGATTCTGGCTTATTACTCCCACCGATGAGTTTCGATCTGGTGGGCCCGTTAAACAAAACTTAACTTCCCATGTGGGCCCCACCACGCTTGCAATGTTTCTGAGTGCACATTATGCTGGAGAGGATTTGGTGCCTAAGTTTAATGCTGGTGAGGCATGGAAGAAAGTTTTTGGTCCTGTTTTCATTTATTTAAATTCTTCCTATGATGGAGGTGACCCCCTTAAGCTATGGGACGATGCTAAACAACAGATGTTGGTGGAAGTTCAAAGCTGGCCCTACAGTTTCCCTGAATCAGAGGACTTTGCTAAGTGGGACGAACGTGGTAATGTTAGTGGCAGGCTTTTGGTTAGAGAGAGGTTTATAAACGATGACTATATATCAGCAAAAGGTGCTTATGTTGGCTTGGCTCCACCAGGCGATGTGGGATCATGGCAAAGAGAATGCAAGAATTATCAGTTTTGGGCTAAAGCAGACGATGATGGCTACTTCACCATCACCAATGTACGTGCAGGAGATTACAATGTTTACGCGTGGGTACCTGGTTTTATTGGTGACTATAAATATGATGTAGTTATGAACATAACAGAAGGCTGTGACATCGACCTTGGTGAGCTTGTGTATGAACCTCCTAGAGATGGTCCAACATTGTGGGAAATTGGCATTCCTGATCGAACAGCTGCTGAGTTCTATGTTCCTGACCCAAATCCCAAATATATCAACAAACTTTATGTTAATCATCCTGACAAGTTTAGGCAATATGGGTTATGGGAGAGATATGCAGAACTCTACCCTGACAAAGACCTGATCTACACAATTGGTGTTAGTGACTACACCAAAGATTGGTTCTTTGCTCAAGTTACCAGGAAGAAAGATGACAACACATTTCAAGGAACCACATGGCAGATCAAGTTTGAGCTTGATAAGGTGAACAAAAGCAGCAGCTATAAACTGCGGGTGGCTTTGGCATCTGCAACATTATCTGAACTTCAGGTTCGAGTAAATAATCCAAAGGGTCCTCGTCCTCTATTTTCAAGTGGGTTGATAGGAAGGGATAACTCGATCGCAAGGCATGGAATTCATGGACTGTATTGGCTTTACAATGTAGACATACCAGGAACTCAATTTGTTGAAGGAGATAACACAATCTTTTTGACACAGACCAGAGGCAACAGTCCATTTCAGGCAATTATGTATGATTATATTCGTTTGGAAGCTCCACCATCAACCTTCAATAACACAAACTCATAA 3909 0.4282 MSGPGVRLHIQDHHGLETPSIIVGVHFSLAHRSEVQYTCTGTETLPCANAKKLQVVMDNGIVQVTLSNPGGIVTGIRYNGVDNLLEVLNKESNRGYWDLVWSAPGSKGIFDVIQGTCFKVIVQNEEQVELSFTRMWDPSLEGKFVPLNIDKRFIMLRGSSGFYSYGIYEHLNGWPDFDLSETRITFKLRKDKFQYMAMADNRRRILPYPEDRLPGRCQTLGYAEAVLLTNPKDPQLQGEVDDKYQYSCANMDNRVHGWISFNPPVGFWQITPSDEFRSGGPLKQNLTSHVGPTTLAMFLSAHYAGQDLVPKIRGGESWKKVFGPVYIYLNSAAVGDDPLWLWEDAKIQMMNEVQSWPYYFPASEDFLKSDQRGNISGRLLVLDKYICTDLISANGAYVGLAPPGDAGSWQRECKDYQFWTRADENGFFTIRNVRPGDYNLFAWVPGFVGDYKFVDFMKITPGSYTELGELVYEPPRDGPTLWEIGIPDRSAAEFYAPDPNPQYINRLFINHPDRFRQYGLWDRYTELYPDADLVYTVGVNDYRKDWFYAQAPRKKEDNTLQGTTWQIKFELSGVVQGSTYKLRVAIASATLAELQIRVNDPNAGRPLFTSGLIGRDNSIARLGIHGIYWLYNVSIPGSLLVDGTNTIYFTQPRCTSPFQEWLQATSDGDSHQEVVMENGILKVTLSNPGGIVTGIQYNNIDNLLEVLNDESNRGYWDLVWSSPTSTSTSGTFDVIKGTKFQVMVENEDQVELSFTRTWDISLEGKLVPLNIDKRFIMLRGCSGFYSYAIYEHLEEWPAFNLNETRIAFKLRKDKFHYMAMADNRQRNMPLPDDRLPPKGKALAYPEAVLLLNPIQPELKGEVDDKYQYSCDNKDNKVHGWICMDPAVGFWLITPTDEFRSGGPVKQNLTSHVGPTTLAMFLSAHYAGEDLVPKFNAGEAWKKVFGPVFIYLNSSYDGGDPLKLWDDAKQQMLVEVQSWPYSFPESEDFAKWDERGNVSGRLLVRERFINDDYISAKGAYVGLAPPGDVGSWQRECKNYQFWAKADDDGYFTITNVRAGDYNVYAWVPGFIGDYKYDVVMNITEGCDIDLGELVYEPPRDGPTLWEIGIPDRTAAEFYVPDPNPKYINKLYVNHPDKFRQYGLWERYAELYPDKDLIYTIGVSDYTKDWFFAQVTRKKDDNTFQGTTWQIKFELDKVNKSSSYKLRVALASATLSELQVRVNNPKGPRPLFSSGLIGRDNSIARHGIHGLYWLYNVDIPGTQFVEGDNTIFLTQTRGNSPFQAIMYDYIRLEAPPSTFNNTNS* 1303
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phac9g02398 1302 SUPERFAMILY Galactose mutarotase-like 674 954 IPR011013 GO:0003824|GO:0005975|GO:0030246
Phac9g02398 1302 Gene3D - 992 1084 - -
Phac9g02398 1302 Gene3D - 368 466 - -
Phac9g02398 1302 Gene3D - 478 667 - -
Phac9g02398 1302 Gene3D - 1100 1291 - -
Phac9g02398 1302 PANTHER RHAMNOGALACTURONATE LYASE FAMILY PROTEIN 669 1294 - -
Phac9g02398 1302 CDD RGL4_C 482 662 - -
Phac9g02398 1302 Pfam Rhamnogalacturonate lyase family 52 240 IPR010325 -
Phac9g02398 1302 Pfam Rhamnogalacturonate lyase family 670 862 IPR010325 -
Phac9g02398 1302 Pfam Polysaccharide lyase family 4, domain III 1102 1290 IPR029411 -
Phac9g02398 1302 Pfam Polysaccharide lyase family 4, domain III 480 662 IPR029411 -
Phac9g02398 1302 CDD RGL4_M 993 1092 IPR029413 -
Phac9g02398 1302 SUPERFAMILY Galactose-binding domain-like 477 658 IPR008979 -
Phac9g02398 1302 Gene3D - 668 958 IPR014718 GO:0030246
Phac9g02398 1302 Gene3D - 48 342 IPR014718 GO:0030246
Phac9g02398 1302 FunFam Rhamnogalacturonate lyase B 368 467 - -
Phac9g02398 1302 Pfam Polysaccharide lyase family 4, domain II 394 466 IPR029413 -
Phac9g02398 1302 Pfam Polysaccharide lyase family 4, domain II 1016 1088 IPR029413 -
Phac9g02398 1302 FunFam Rhamnogalacturonate lyase B 990 1089 - -
Phac9g02398 1302 SUPERFAMILY Starch-binding domain-like 370 468 IPR013784 GO:0030246
Phac9g02398 1302 SUPERFAMILY Starch-binding domain-like 1032 1082 IPR013784 GO:0030246
Phac9g02398 1302 CDD RGL4_M 371 470 IPR029413 -
Phac9g02398 1302 CDD RGL4_N 52 338 - -
Phac9g02398 1302 SUPERFAMILY Galactose-binding domain-like 1099 1291 IPR008979 -
Phac9g02398 1302 SUPERFAMILY Galactose mutarotase-like 61 333 IPR011013 GO:0003824|GO:0005975|GO:0030246
Phac9g02398 1302 CDD RGL4_C 1104 1291 - -
Phac9g02398 1302 CDD RGL4_N 669 963 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phac9g02398 Phac-Chr9 22834169 22848987 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Phac9g02398 51 659 Polysaccharide Lyase AT1G09890 68.903 0.0 886
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Phac9g02398 K18195 - gmx:100814721 1237.63