Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phac9g02397 ATGGGCTTCACTAATCACTTCCTGTTCTTGATGATGCTGCAATTCCTCGTGGCTCTGGGAGCTGATACCAAACCAGGAGTACGATTGGATATTCAAGATAAACATGTGATAATGGATAATGGCATAGTCCAGGTCAACTTATCCAATCCTGAAGGGATTGTCACGGGAATTCAATATAATGGCATCGACAATTTGCTCGAAGTTCTTAACGAAGAATACGACAGAGGGTACTGGGATATTGTATGGGACCAAGGTGGAGAAAATAGAACAAAAAAAGGAGCAAAGGGAAAGGGTAGATTTGACAGAATGGAAGCCACAAATTTAACGGTGATAGTGGAAAACGAGGAACAAGTAGAGCTATCTTTCACCAGAACATGGAATGTCTCTTTTGTAGGGAAACTTCCACCACTCAATATTGACAAAAGGTTTATAATGCTTCGTGGTTCTTCTGGGTTCTACACCTATGCCATTTACGAGCATTTGAAGGAATGGCCAGCTTTCGATCTCGACAATACTAGGATCGCATTCAAGCCTAGGAAAGAGAAGTTCCATTACATGTCTGTAGCAGACAACAGACAAAGATTTATGCCTCTGCCCGATGACCGAATACCCCCAAGAGGTCAAGTTCTTGCCTACCCTGAGGCTGTGCGTCTTGTTGACCCCGTGGAGCCTGAATTCAAAGGCGAGGTGGATGATAAATATCAGTATTCGTGCGAGAGTCGATACAATAAAGTTCACGGCTGGATGAGCATTGATCCATTGAATTCCACTGGATTCTGGCTAATTACTCCAAGCTATGAGTTCCGATCTGCTGGACCCCTCAAGCAATATCTTACTTCTCATGTTGGCCCCACCACACTCTCTGTATTTCATAGCACGCATTATTCAGGGACGGATCTGATAATGCAATTTGGACCTAATGAGCCGTGGAAGAAAGTCTATGGCCCCATATTTATATACCTCAATTCTCAATCTAACGGGGTTAGCCCAATCAAACTCTGGGAGGACGCCAAACAACAGATGGTCAATGAAGTTGAAAGCTGGCCCTATACTTTTCCAGCTTCCAAGGACTTTCTCTCATCTGAGGAACGAGGTAAAGTCGAAGGTAGATTGCTTGTCCGAGACAGGATTGTCAATGATGCATTCATCCCAGTTAGTGGTGCTTATGTGGGACTAGCAGCCATAGGAGATGTTGGATCTTGGCAACGAGAATGTAAGGGTTATCAATTTTGGACCATTACTGATGATAAAGGCTATTTCTCAATTATTAACGTACGCCCTGGGGACTATAATCTCTACTCCTGGGTCACTGGATACATTGGTGATTATCAATTCGATAAAATCATCAACGTAACTTCAGGTTTAGGCAATATGGTTTGTGGGAGAGATATGCTGATTTGTATCCAAATAAAGACCTAG 1419 0.4313 MGFTNHFLFLMMLQFLVALGADTKPGVRLDIQDKHVIMDNGIVQVNLSNPEGIVTGIQYNGIDNLLEVLNEEYDRGYWDIVWDQGGENRTKKGAKGKGRFDRMEATNLTVIVENEEQVELSFTRTWNVSFVGKLPPLNIDKRFIMLRGSSGFYTYAIYEHLKEWPAFDLDNTRIAFKPRKEKFHYMSVADNRQRFMPLPDDRIPPRGQVLAYPEAVRLVDPVEPEFKGEVDDKYQYSCESRYNKVHGWMSIDPLNSTGFWLITPSYEFRSAGPLKQYLTSHVGPTTLSVFHSTHYSGTDLIMQFGPNEPWKKVYGPIFIYLNSQSNGVSPIKLWEDAKQQMVNEVESWPYTFPASKDFLSSEERGKVEGRLLVRDRIVNDAFIPVSGAYVGLAAIGDVGSWQRECKGYQFWTITDDKGYFSIINVRPGDYNLYSWVTGYIGDYQFDKIINVTSGLGNMVCGRDMLICIQIKT* 473
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phac9g02397 472 Gene3D - 102 323 IPR014718 GO:0030246
Phac9g02397 472 FunFam Rhamnogalacturonate lyase B 360 457 - -
Phac9g02397 472 Pfam Rhamnogalacturonate lyase family 26 230 IPR010325 -
Phac9g02397 472 CDD RGL4_N 32 325 - -
Phac9g02397 472 Pfam Polysaccharide lyase family 4, domain II 386 454 IPR029413 -
Phac9g02397 472 PANTHER RHAMNOGALACTURONATE LYASE FAMILY PROTEIN 32 455 - -
Phac9g02397 472 Gene3D - 360 458 - -
Phac9g02397 472 SUPERFAMILY Starch-binding domain-like 375 446 IPR013784 GO:0030246
Phac9g02397 472 CDD RGL4_M 363 454 IPR029413 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phac9g02397 Phac-Chr9 22818220 22822895 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Phac9g02397 26 455 Polysaccharide Lyase AT1G09910 62.791 0.0 558
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Phac9g02397 K18195 - gmx:100786488 852.818