Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phac9g02394 ATGGGCTTCACTAATCACTTCCTGTTCTTGATGATGCTGCAATTCCTCGTGGCTCTGGGAGCTGATACCAAACCAGGAGTACGATTGGATATTCAAGATAAACATGTGATAATGGATAATGGCATAGTCCAGGTCAACTTATCCAATCCTGAAGGGATTGTCACGGGAATTCAATATAATGGCATCGACAATTTGCTCGAAGTTCTTAACGAAGAATACGACAGAGGGTACTGGGATATTGTATGGGACCAAGGTGGAGAAAATAGAACAAAAAAAGGAGCAAAGGGAAAGGGTAGATTTGACAGAATGGAAGCCACAAATTTAACGGTGATAGTGGAAAACGAGGAACAAGTAGAGCTATCTTTCACCAGAACATGGAATGTCTCTTTTGTAGGGAAACTTCCACCACTCAATATTGACAAAAGGTTTATAATGCTTCGTGGTTCTTCTGGGTTCTACACCTATGCCATTTACGAGCATTTGAAGGAATGGCCAGCTTTCGATCTCGACAATACTAGGATCGCATTCAAGCCTAGGAAAGAGAAGTTCCATTACATGTCTGTAGCAGACAACAGACAAAGATTTATGCCTCTGCCCGATGACCGAATACCCCCAAGAGGTCAAGTTCTTGCCTACCCTGAGGCTGTGCGTCTTGTTGACCCCGTGGAGCCTGAATTCAAAGGCGAGGTGGATGATAAATATCAGTATTCGTGCGAGAGTCGATACAATAAAGTTCACGGCTGGATGAGCATTGATCCATTGAATTCCACTGGATTCTGGCTAATTACTCCAAGCTATGAGTTCCGATCTGCTGGACCCCTCAAGCAATATCTTACTTCTCATGTTGGCCCCACCACACTCTCTGTAAGACCTTTTGCTAACATTTTTTTATCACTGTATTGTACTTTCTCATCTTCTTTTTTTGGTTCAGATCAGAACAAAATTCAATTCTACATGAATCAGGTATTTCATAGCACGCATTATTCAGGGACGGATCTGATAATGCAATTTGGACCTAATGAGCCGTGGAAGAAAGTCTATGGCCCCATATTTATATACCTCAATTCTCAATCTAACGGGGTTAGCCCAATCAAACTCTGGGAGGACGCCAAACAACAGATGGTCAATGAAGTTGAAAGCTGGCCCTATACTTTTCCAGCTTCCAAGGACTTTCTCTCATCTGAGGAACGAGGTAAAGTCGAAGGTAGATTGCTTGTCCGAGACAGGATTGTCAATGATGCATTCATCCCAGTTAGTGGTGCTTATGTGGGACTAGCAGCCATAGGAGATGTTGGATCTTGGCAACGAGAATGTAAGGGTTATCAATTTTGGACCATTACTGATGATAAAGGCTATTTCTCAATTATTAACGTACGCCCTGGGGACTATAATCTCTACTCCTGGGTCACTGGATACATTGGTGATTATCAATTCGATAAAATCATCAACGTAACTTCAGGTTGTGAAATTAATGTGAGTGAGCTTGTTTATGAGCCACCTAGAGATGGTCCTACGTTGTGGGAAATAGGCATCCCTGATCGTTCAGCTGCTGAGTTCTATGTTCCTGACCCAAATCCCATGTACATTAACAAACTCTATGTCAACCATACAGACAGGTTTAGGCAATATGGTTTGTGGGAGAGATATGCTGATTTGTATCCAAATAAAGACCTAGTTTACACTGTTGGCGTTAGTGACTACAGAAAAGATTGGTTCTTTGCTCAGGTTAATAGGAAGAAAGATAATGGCACTTACCAAGGAACCACATGGCAAATTAACTTCAACCTTGATCGTGTGAATACGAATGGAAGCTACACATTGCGAGTGGCTCTGGCATCTGCGCATGGTGCTGAATTACAGGTATAA 1866 0.4228 MGFTNHFLFLMMLQFLVALGADTKPGVRLDIQDKHVIMDNGIVQVNLSNPEGIVTGIQYNGIDNLLEVLNEEYDRGYWDIVWDQGGENRTKKGAKGKGRFDRMEATNLTVIVENEEQVELSFTRTWNVSFVGKLPPLNIDKRFIMLRGSSGFYTYAIYEHLKEWPAFDLDNTRIAFKPRKEKFHYMSVADNRQRFMPLPDDRIPPRGQVLAYPEAVRLVDPVEPEFKGEVDDKYQYSCESRYNKVHGWMSIDPLNSTGFWLITPSYEFRSAGPLKQYLTSHVGPTTLSVRPFANIFLSLYCTFSSSFFGSDQNKIQFYMNQVFHSTHYSGTDLIMQFGPNEPWKKVYGPIFIYLNSQSNGVSPIKLWEDAKQQMVNEVESWPYTFPASKDFLSSEERGKVEGRLLVRDRIVNDAFIPVSGAYVGLAAIGDVGSWQRECKGYQFWTITDDKGYFSIINVRPGDYNLYSWVTGYIGDYQFDKIINVTSGCEINVSELVYEPPRDGPTLWEIGIPDRSAAEFYVPDPNPMYINKLYVNHTDRFRQYGLWERYADLYPNKDLVYTVGVSDYRKDWFFAQVNRKKDNGTYQGTTWQINFNLDRVNTNGSYTLRVALASAHGAELQV* 622
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phac9g02394 621 Pfam Polysaccharide lyase family 4, domain II 419 491 IPR029413 -
Phac9g02394 621 FunFam Rhamnogalacturonate lyase B 393 492 - -
Phac9g02394 621 Pfam Polysaccharide lyase family 4, domain III 505 621 IPR029411 -
Phac9g02394 621 Gene3D - 393 493 - -
Phac9g02394 621 CDD RGL4_N 32 358 - -
Phac9g02394 621 Gene3D - 503 621 - -
Phac9g02394 621 Gene3D - 105 331 IPR014718 GO:0030246
Phac9g02394 621 SUPERFAMILY Galactose-binding domain-like 502 621 IPR008979 -
Phac9g02394 621 Pfam Rhamnogalacturonate lyase family 26 230 IPR010325 -
Phac9g02394 621 CDD RGL4_M 396 495 IPR029413 -
Phac9g02394 621 SUPERFAMILY Starch-binding domain-like 408 492 IPR013784 GO:0030246
Phac9g02394 621 PANTHER RHAMNOGALACTURONATE LYASE FAMILY PROTEIN 32 621 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phac9g02394 Phac-Chr9 22818220 22822895 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Phac9g02394 27 621 Polysaccharide Lyase AT1G09890 62.375 0.0 752
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Phac9g02394 K18195 - gmx:100786488 1087.02