Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phac9g02390 ATGGGCTTCACTAATCACTTCCTGTTCTTGATGATGCTGCAATTCCTCGTGGCTCTGGGAGCTGATACCAAACCAGGAGTACGATTGGATATTCAAGATAAACATGTGATAATGGATAATGGCATAGTCCAGGTCAACTTATCCAATCCTGAAGGGATTGTCACGGGAATTCAATATAATGGCATCGACAATTTGCTCGAAGTTCTTAACGAAGAATACGACAGAGGGTACTGGGATATTGTATGGGACCAAGGTGGAGAAAATAGAACAAAAAAAGGAGCAAAGGGAAAGGGTAGATTTGACAGAATGGAAGCCACAAATTTAACGGTGATAGTGGAAAACGAGGAACAAGTAGAGCTATCTTTCACCAGAACATGGAATGTCTCTTTTGTAGGGAAACTTCCACCACTCAATATTGACAAAAGGTTTATAATGCTTCGTGGTTCTTCTGGGTTCTACACCTATGCCATTTACGAGCATTTGAAGGAATGGCCAGCTTTCGATCTCGACAATACTAGGATCGCATTCAAGCCTAGGAAAGAGAAGTTCCATTACATGTCTGTAGCAGACAACAGACAAAGATTTATGCCTCTGCCCGATGACCGAATACCCCCAAGAGGTCAAGTTCTTGCCTACCCTGAGGCTGTGCGTCTTGTTGACCCCGTGGAGCCTGAATTCAAAGGCGAGGTGGATGATAAATATCAGTATTCGTGCGAGAGTCGATACAATAAAGTTCACGGCTGGATGAGCATTGATCCATTGAATTCCACTGGATTCTGGCTAATTACTCCAAGCTATGAGTTCCGATCTGCTGGACCCCTCAAGCAATATCTTACTTCTCATGTTGGCCCCACCACACTCTCTGTAAGACCTTTTGCTAACATTTTTTTATCACTGTATTGTACTTTCTCATCTTCTTTTTTTGGTTCAGATCAGAACAAAATTCAATTCTACATGAATCAGGTATTTCATAGCACGCATTATTCAGGGACGGATCTGATAATGCAATTTGGACCTAATGAGCCGTGGAAGAAAGTCTATGGCCCCATATTTATATACCTCAATTCTCAATCTAACGGGGTTAGCCCAATCAAACTCTGGGAGGACGCCAAACAACAGATGGTCAATGAAGTTGAAAGCTGGCCCTATACTTTTCCAGCTTCCAAGGACTTTCTCTCATCTGAGGAACGAGGTAAAGTCGAAGGTAGATTGCTTGTCCGAGACAGGATTGTCAATGATGCATTCATCCCAGTTAGTGGTGCTTATGTGGGACTAGCAGCCATAGGAGATGTTGGATCTTGGCAACGAGAATGTAAGGGTTATCAATTTTGGACCATTACTGATGATAAAGGCTATTTCTCAATTATTAACGTACGCCCTGGGGACTATAATCTCTACTCCTGGGTCACTGGATACATTGGTGATTATCAATTCGATAAAATCATCAACGTAACTTCAGGTTGTGAAATTAATGTGAGTGAGCTTGTTTATGAGCCACCTAGAGATGGTCCTACGTTGTGGGAAATAGGCATCCCTGATCGTTCAGCTGCTGAGTTCTATGTTCCTGACCCAAATCCCATGTACATTAACAAACTCTATGTCAACCATACAGACAGGTTTAGGCAATATGGTTTGTGGGAGAGATATGCTGATTTGTATCCAAATAAAGACCTAGTTTACACTGTTGGCGTTAGTGACTACAGAAAAGATTGGTTCTTTGCTCAGGTTAATAGGAAGAAAGATAATGGCACTTACCAAGGAACCACATGGCAAATTAACTTCAACCTTGATCGTGTGAATACGAATGGAAGCTACACATTGCGAGTGGCTCTGGCATCTGCGCATGGTGCTGAATTACAGATTCGGATAAACAAATTAGAAGCAGATCCAGCTTTATTTTCAAGTGGAGTAATTGGAAAGGAGAATACAATAGCTAGACATGGAATTCACGGTTTCTACTGGCTATTCAGCATTGATGTAGACGGCACTCTTCTTGTGCAGGGGAACAATACCATCTTTTTAACGCAACCAATGAACACAAGTCCTTTTATAGGAATTATGTACGACTATATTCGTTTGGAATATAAACGCTGA 2094 0.4179 MGFTNHFLFLMMLQFLVALGADTKPGVRLDIQDKHVIMDNGIVQVNLSNPEGIVTGIQYNGIDNLLEVLNEEYDRGYWDIVWDQGGENRTKKGAKGKGRFDRMEATNLTVIVENEEQVELSFTRTWNVSFVGKLPPLNIDKRFIMLRGSSGFYTYAIYEHLKEWPAFDLDNTRIAFKPRKEKFHYMSVADNRQRFMPLPDDRIPPRGQVLAYPEAVRLVDPVEPEFKGEVDDKYQYSCESRYNKVHGWMSIDPLNSTGFWLITPSYEFRSAGPLKQYLTSHVGPTTLSVRPFANIFLSLYCTFSSSFFGSDQNKIQFYMNQVFHSTHYSGTDLIMQFGPNEPWKKVYGPIFIYLNSQSNGVSPIKLWEDAKQQMVNEVESWPYTFPASKDFLSSEERGKVEGRLLVRDRIVNDAFIPVSGAYVGLAAIGDVGSWQRECKGYQFWTITDDKGYFSIINVRPGDYNLYSWVTGYIGDYQFDKIINVTSGCEINVSELVYEPPRDGPTLWEIGIPDRSAAEFYVPDPNPMYINKLYVNHTDRFRQYGLWERYADLYPNKDLVYTVGVSDYRKDWFFAQVNRKKDNGTYQGTTWQINFNLDRVNTNGSYTLRVALASAHGAELQIRINKLEADPALFSSGVIGKENTIARHGIHGFYWLFSIDVDGTLLVQGNNTIFLTQPMNTSPFIGIMYDYIRLEYKR* 698
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phac9g02390 697 CDD RGL4_N 32 358 - -
Phac9g02390 697 Pfam Polysaccharide lyase family 4, domain II 419 491 IPR029413 -
Phac9g02390 697 Pfam Rhamnogalacturonate lyase family 26 230 IPR010325 -
Phac9g02390 697 Pfam Polysaccharide lyase family 4, domain III 505 693 IPR029411 -
Phac9g02390 697 CDD RGL4_M 396 495 IPR029413 -
Phac9g02390 697 SUPERFAMILY Starch-binding domain-like 408 492 IPR013784 GO:0030246
Phac9g02390 697 SUPERFAMILY Galactose-binding domain-like 502 695 IPR008979 -
Phac9g02390 697 Gene3D - 503 694 - -
Phac9g02390 697 PANTHER RHAMNOGALACTURONATE LYASE FAMILY PROTEIN 32 695 - -
Phac9g02390 697 Gene3D - 393 493 - -
Phac9g02390 697 Gene3D - 106 330 IPR014718 GO:0030246
Phac9g02390 697 FunFam Rhamnogalacturonate lyase B 393 492 - -
Phac9g02390 697 CDD RGL4_C 507 694 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phac9g02390 Phac-Chr9 22818220 22822895 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Phac9g02390 27 694 Polysaccharide Lyase AT1G09890 62.593 0.0 855
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Phac9g02390 K18195 - gmx:100786488 1221.07