Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phac9g02387 ATGGGCTTCACTAATCACTTCCTGTTCTTGATGATGCTGCAATTCCTCGTGGCTCTGGGAGCTGATACCAAACCAGGAGTACGATTGGATATTCAAGATAAACATGTGATAATGGATAATGGCATAGTCCAGGTCAACTTATCCAATCCTGAAGGGATTGTCACGGGAATTCAATATAATGGCATCGACAATTTGCTCGAAGTTCTTAACGAAGAATACGACAGAGGGTACTGGGATATTGTATGGGACCAAGGTGGAGAAAATAGAACAAAAAAAGGAGCAAAGGGAAAGGGTAGATTTGACAGAATGGAAGCCACAAATTTAACGGTGATAGTGGAAAACGAGGAACAAGTAGAGCTATCTTTCACCAGAACATGGAATGTCTCTTTTGTAGGGAAACTTCCACCACTCAATATTGACAAAAGGTTTATAATGCTTCGTGGTTCTTCTGGGTTCTACACCTATGCCATTTACGAGCATTTGAAGGAATGGCCAGCTTTCGATCTCGACAATACTAGGATCGCATTCAAGCCTAGGAAAGAGAAGTTCCATTACATGTCTGTAGCAGACAACAGACAAAGATTTATGCCTCTGCCCGATGACCGAATACCCCCAAGAGGTCAAGTTCTTGCCTACCCTGAGGCTGTGCGTCTTGTTGACCCCGTGGAGCCTGAATTCAAAGGCGAGGTGGATGATAAATATCAGTATTCGTGCGAGAGTCGATACAATAAAGTTCACGGCTGGATGAGCATTGATCCATTGAATTCCACTGGATTCTGGCTAATTACTCCAAGCTATGAGTTCCGATCTGCTGGACCCCTCAAGCAATATCTTACTTCTCATGTTGGCCCCACCACACTCTCTGTATTTCATAGCACGCATTATTCAGGGACGGATCTGATAATGCAATTTGGACCTAATGAGCCGTGGAAGAAAGTCTATGGCCCCATATTTATATACCTCAATTCTCAATCTAACGGGGTTAGCCCAATCAAACTCTGGGAGGACGCCAAACAACAGATGGTCAATGAAGTTGAAAGCTGGCCCTATACTTTTCCAGCTTCCAAGGACTTTCTCTCATCTGAGGAACGAGGTAAAGTCGAAGGTAGATTGCTTGTCCGAGACAGGATTGTCAATGATGCATTCATCCCAGTTAGTGGTGCTTATGTGGGACTAGCAGCCATAGGAGATGTTGGATCTTGGCAACGAGAATGTAAGGGTTATCAATTTTGGACCATTACTGATGATAAAGGCTATTTCTCAATTATTAACGTACGCCCTGGGGACTATAATCTCTACTCCTGGGTCACTGGATACATTGGTGATTATCAATTCGATAAAATCATCAACGTAACTTCAGGTTGTGAAATTAATGTGAGTGAGCTTGTTTATGAGCCACCTAGAGATGGTCCTACGTTGTGGGAAATAGGCATCCCTGATCGTTCAGCTGCTGAGTTCTATGTTCCTGACCCAAATCCCATGTACATTAACAAACTCTATGTCAACCATACAGACAGGTTTAGGCAATATGGTTTGTGGGAGAGATATGCTGATTTGTATCCAAATAAAGACCTAGTTTACACTGTTGGCGTTAGTGACTACAGAAAAGATTGGTTCTTTGCTCAGGTTAATAGGAAGAAAGATAATGGCACTTACCAAGGAACCACATGGCAAATTAACTTCAACCTTGATCGTGTGAATACGAATGGAAGCTACACATTGCGAGTGGCTCTGGCATCTGCGCATGGTGCTGAATTACAGGTATAA 1767 0.4301 MGFTNHFLFLMMLQFLVALGADTKPGVRLDIQDKHVIMDNGIVQVNLSNPEGIVTGIQYNGIDNLLEVLNEEYDRGYWDIVWDQGGENRTKKGAKGKGRFDRMEATNLTVIVENEEQVELSFTRTWNVSFVGKLPPLNIDKRFIMLRGSSGFYTYAIYEHLKEWPAFDLDNTRIAFKPRKEKFHYMSVADNRQRFMPLPDDRIPPRGQVLAYPEAVRLVDPVEPEFKGEVDDKYQYSCESRYNKVHGWMSIDPLNSTGFWLITPSYEFRSAGPLKQYLTSHVGPTTLSVFHSTHYSGTDLIMQFGPNEPWKKVYGPIFIYLNSQSNGVSPIKLWEDAKQQMVNEVESWPYTFPASKDFLSSEERGKVEGRLLVRDRIVNDAFIPVSGAYVGLAAIGDVGSWQRECKGYQFWTITDDKGYFSIINVRPGDYNLYSWVTGYIGDYQFDKIINVTSGCEINVSELVYEPPRDGPTLWEIGIPDRSAAEFYVPDPNPMYINKLYVNHTDRFRQYGLWERYADLYPNKDLVYTVGVSDYRKDWFFAQVNRKKDNGTYQGTTWQINFNLDRVNTNGSYTLRVALASAHGAELQV* 589
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phac9g02387 588 Gene3D - 360 460 - -
Phac9g02387 588 SUPERFAMILY Starch-binding domain-like 375 459 IPR013784 GO:0030246
Phac9g02387 588 Pfam Rhamnogalacturonate lyase family 26 230 IPR010325 -
Phac9g02387 588 PANTHER RHAMNOGALACTURONATE LYASE FAMILY PROTEIN 32 588 - -
Phac9g02387 588 CDD RGL4_N 32 325 - -
Phac9g02387 588 CDD RGL4_M 363 462 IPR029413 -
Phac9g02387 588 SUPERFAMILY Galactose-binding domain-like 469 588 IPR008979 -
Phac9g02387 588 Gene3D - 104 323 IPR014718 GO:0030246
Phac9g02387 588 Pfam Polysaccharide lyase family 4, domain III 472 588 IPR029411 -
Phac9g02387 588 Gene3D - 470 588 - -
Phac9g02387 588 FunFam Rhamnogalacturonate lyase B 360 459 - -
Phac9g02387 588 Pfam Polysaccharide lyase family 4, domain II 386 458 IPR029413 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phac9g02387 Phac-Chr9 22818220 22822895 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Phac9g02387 27 588 Polysaccharide Lyase AT1G09890 66.018 0.0 769
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Phac9g02387 K18195 - gmx:100786488 1103.97