Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phac9g02386 ATGGCTCCTGCACCTTCCTTCACTCTCTCCCTCTTCCTCCTCCTCCTCCTCACTCTCCTCCTGCTCCTTACACACGCAGCACAGTCCAGAGAAACTCCACCTCCAACTCCCCATCGAATCATTGCTCCACCACCGCCCGACAACGACAATGACACCTCGCCGCCGTTCAGACCAGGCATAGCGGTGGTGGTCTGCGTTTTGACCACTATAATCTCCCTCACGTCGCTCCTCCTCCTCTACATCAAACACTGCAACGGCGGCGCCATCCACGGCGGCGGAAGCGGCGGGAGCTCGATTCCCTGGACGGTGGCGCCTTTCGCCGGGAGAAAGAACTCCGGCATTGACCGGTCCGTGGTGGAATCGCTTCCCGTTTTCAGATTCGGAGCGCTGCGGGGACAGAAGGAAGGGCTGGACTGCGCGGTGTGCCTGACGAAGTTCGAGGCGGCGGAGGTTCTGCGGCTGCTGCCGAAGTGCAAGCACGCGTTCCACGTCGAGTGCGTGGACACGTGGCTGGACGCGCATTCCACGTGTCCTCTCTGCCGCTACCGCGTGGATCCGGAGGACATTCTTCTGGTGGAGGACGCAAAGGCATTCCGGCAAAGTCAGCAACAACGGAACAGCCACAACAACAACGAGGAACGCGTGCGATTGAATTTGGACGTGGAGAAGCAGGAGATTGTGGAGTGTGGGCGGAGGCATTCGTCAGTGGGCGAGAGGGAAACAGAGGAGCAGAGTCGGAGGTGGACGTCGTCGTTTAGGAGGTCGTTGGATAGCGCGACATCCAAGAAAAAAAACGAGAGCGTTGGTGTTGTTGGCATTGGTTGGTTTGTACGTGGCAGAAAAGACGGGATGCTGTTGACGCAAGAAACGGAGAGAGAGGGAGATAGGACAAGCGTGGAACGGAGGTTGGAACACCGGATCATTGTCTCCCCGGGCCCAGGGAAAATGAATGGGGTCCAGCAGCGATGGAGCGACGTGCAAGCTTCGGACCTGCTGTATCTGACGTCGGAGATGATAATGAGTGAATCGCAATGGAACACGCGCCGCGGAGGAAGAGGAAGAGCAAGAGGAAGAGGAAGGGGAAGGAGGAGGGGCCGTACGAATGATGATGAGGTTGAGGACAGTTGGAGTGGCAGAGGGATAATAAATTCGAGAAGTGTGTCTGAGATCACGGGATTGAGCAGGTTCTCCAGCAATGGCAATAATAATAACGAGGAGGACAGAGACAGAGACAGAGACAGAGAGTGGGAGCAACAAGGACAGGGAGAGAGAGAAGAGGGACTGGTGAGAAGGTGGTTGGGTTGGATTTCAAACTCACGCACACAACAAACCCAACCAGCTGTACGGTAA 1350 0.5674 MAPAPSFTLSLFLLLLLTLLLLLTHAAQSRETPPPTPHRIIAPPPPDNDNDTSPPFRPGIAVVVCVLTTIISLTSLLLLYIKHCNGGAIHGGGSGGSSIPWTVAPFAGRKNSGIDRSVVESLPVFRFGALRGQKEGLDCAVCLTKFEAAEVLRLLPKCKHAFHVECVDTWLDAHSTCPLCRYRVDPEDILLVEDAKAFRQSQQQRNSHNNNEERVRLNLDVEKQEIVECGRRHSSVGERETEEQSRRWTSSFRRSLDSATSKKKNESVGVVGIGWFVRGRKDGMLLTQETEREGDRTSVERRLEHRIIVSPGPGKMNGVQQRWSDVQASDLLYLTSEMIMSESQWNTRRGGRGRARGRGRGRRRGRTNDDEVEDSWSGRGIINSRSVSEITGLSRFSSNGNNNNEEDRDRDRDREWEQQGQGEREEGLVRRWLGWISNSRTQQTQPAVR* 450
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phac9g02386 449 MobiDBLite consensus disorder prediction 402 425 - -
Phac9g02386 449 PANTHER E3 UBIQUITIN-PROTEIN LIGASE ATL42 27 436 - -
Phac9g02386 449 Pfam Ring finger domain 138 181 IPR001841 -
Phac9g02386 449 MobiDBLite consensus disorder prediction 232 250 - -
Phac9g02386 449 SMART ring_2 139 180 IPR001841 -
Phac9g02386 449 CDD RING-H2_EL5-like 138 181 - -
Phac9g02386 449 ProSiteProfiles Zinc finger RING-type profile. 139 181 IPR001841 -
Phac9g02386 449 MobiDBLite consensus disorder prediction 232 263 - -
Phac9g02386 449 SUPERFAMILY RING/U-box 133 186 - -
Phac9g02386 449 MobiDBLite consensus disorder prediction 392 425 - -
Phac9g02386 449 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 113 188 IPR013083 -
Phac9g02386 449 MobiDBLite consensus disorder prediction 29 53 - -
Phac9g02386 449 MobiDBLite consensus disorder prediction 36 52 - -
Phac9g02386 449 MobiDBLite consensus disorder prediction 344 376 - -
Phac9g02386 449 FunFam RING-H2 finger protein ATL43 114 188 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phac9g02386 Phac-Chr9 22808482 22812493 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Phac9g02386 58 435 C3H Transcription Factor Family AT5G05810 45.274 4.72e-84 262
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Phac9g02386 K19041 - gmx:100794083 434.491