Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phac9g02353 ATGACGAGGGCGAAGATAAAGATAAAGAAAATCGACAACATAACGGCGAGGCAGGTAACATTTTCTAAGAGGAGGCGAGGGTTGTTCAAGAAAGCTGAAGAGCTTTCTGTGCTATGCGATGCTGACGTTGGTCTCATAGTTTTCTCATCTACCGGGAAGCTCTTTGAGTATAGCAGTTCCAGTATGAATGACATAATTACAAAGTATAATACGCACTCGCCTGGCATCAATAAATTGGATAGGCCATCACTAGAACTGCAGCTAGAGGCTAGCAATAGCGCCAAATTGAATAAGGAAATTGCAGACAGAACCCAAGAACTAAGTTGGATGAAAGGCGATGATCTTCAAGGACTAGGCCTAAATGAGTTGCAACAACTGGAGAAAACACTTGAAAGTGGACTCGATCGTGTCATTGAGATAAAGGAAAAGCAGATGATGAGCCAGATTTCTGAACTTCGGAAAAAGGGAATCCTCTTGGAAGAAGAGAACAAGCATTTAAAGAGAAAGCTAGTGGAGACGGAGATGGAGGCTATGCTGCGTAAAGCAAAAATGCCTTTTATGATGGACTCGAACATGGGAATGCAAGAAGAAGGTGTTTCATTAGAGTCTACAAACAACGTTAGCAGTTGCATCAGTGACCCTCATGTTGAAGATGGTTCCTCGGACACATCTCTCAAGTTAGGGCTTCCCTTCTCTAAGTGA 702 0.4288 MTRAKIKIKKIDNITARQVTFSKRRRGLFKKAEELSVLCDADVGLIVFSSTGKLFEYSSSSMNDIITKYNTHSPGINKLDRPSLELQLEASNSAKLNKEIADRTQELSWMKGDDLQGLGLNELQQLEKTLESGLDRVIEIKEKQMMSQISELRKKGILLEEENKHLKRKLVETEMEAMLRKAKMPFMMDSNMGMQEEGVSLESTNNVSSCISDPHVEDGSSDTSLKLGLPFSK* 234
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phac9g02353 233 Coils Coil 149 169 - -
Phac9g02353 233 Gene3D - 13 82 IPR036879 GO:0003677|GO:0046983
Phac9g02353 233 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Phac9g02353 233 SUPERFAMILY SRF-like 2 74 IPR036879 GO:0003677|GO:0046983
Phac9g02353 233 CDD MADS_MEF2_like 12 73 IPR033896 GO:0000977|GO:0045944
Phac9g02353 233 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Phac9g02353 233 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Phac9g02353 233 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Phac9g02353 233 FunFam Transcription factor, MADS-box 13 83 - -
Phac9g02353 233 ProSiteProfiles K-box domain profile. 86 176 IPR002487 GO:0003700|GO:0005634|GO:0006355
Phac9g02353 233 PANTHER SERUM RESPONSE FACTOR HOMOLOG 3 187 - -
Phac9g02353 233 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Phac9g02353 233 MobiDBLite consensus disorder prediction 201 218 - -
Phac9g02353 233 Coils Coil 123 143 - -
Phac9g02353 233 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Phac9g02353 233 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Phac9g02353 233 MobiDBLite consensus disorder prediction 201 233 - -
Phac9g02353 233 Pfam K-box region 91 170 IPR002487 GO:0003700|GO:0005634|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phac9g02353 Phac-Chr9 22489438 22493100 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Phac9g02353 1 231 MADS-box Gene Family AT2G22540 55.649 5.58e-81 240
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Phac9g02353 K-box 2.6e-15 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Phac9g02353 - - gmx:100776749 375.17